Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1301 140 5e-29 seq264 129 9e-26 seq357 123 4e-24 seq85 116 6e-22 seq1558 111 2e-20 seq147 80.6 4e-11 >seq1301 Length=40146 Score = 140 bits (154), Expect = 5e-29 Identities = 161/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || |||||||| || ||||| ||||| || ||||| || ||||| || ||||| || ||| Sbjct 34621 GACAACATCCAGGGGATCACGAAGCCGGCGATCCGACGGCTGGCGCGGCGTGGCGGCGTC 34562 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| || || | |||| || |||| |||| || | |||||||||||| || Sbjct 34561 AAGCGGATCAGCGGGCTCATCTACGAGGAGACACGTGGCGTCCTCAAGATCTTCCTCGAG 34502 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| |||| || || || ||| || ||||||||| || ||||| |||||| || Sbjct 34501 AACGTCATCCGCGACGCCGTCACCTACACTGAGCACGCTCGCCGGAAGACGGTCACCGCC 34442 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTA 16676 ||||| ||||||| || |||| || || ||||||| Sbjct 34441 ATGGACGTCGTCTACGCTCTGAAGCGCCAGGGCCGTA 34405 >seq264 Length=208598 Score = 129 bits (142), Expect = 9e-26 Identities = 176/246 (72%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| |||||||| || ||||| ||||| || || || ||||||||||| | || || | Sbjct 147995 GAGACAACATCCAGGGCATCACGAAGCCGGCGATTCGGCGTCTGGCTCGCAGAGGAGGTG 148054 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| || || || ||||||| |||| | | || | ||||||||| | Sbjct 148055 TGAAGCGTATCAGCGGTCTGATCTATGAGGAGACCAGAGGAGTCCTCAAGATCTTCTTGG 148114 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| |||| ||| || || ||| ||||||||||| | ||||| |||||| Sbjct 148115 AGAACGTCATCCGTGACGCCGTCACCTACACCGAGCACGCCCGGAGGAAGACCGTCACCG 148174 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| ||||||| || ||||| | || ||| | | | || ||||| || ||| Sbjct 148175 CCATGGATGTCGTCTACGCCTTGAAGAGGCAGGGCAGGACCCTCTACGGTTTCGGCGGTT 148234 Query 16698 AATCTT 16703 || || Sbjct 148235 GATTTT 148240 >seq357 Length=172745 Score = 123 bits (136), Expect = 4e-24 Identities = 172/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| |||||||| || || || ||||| || || || |||||||||||| | || || | Sbjct 93683 GAGACAACATCCAGGGCATAACGAAGCCGGCGATTCGGCGTCTGGCTCGTAGAGGAGGTG 93742 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| || || || |||| || |||| | | ||| | ||||||||| | Sbjct 93743 TGAAGCGTATCAGCGGTCTGATCTACGAGGAGACCAGAGGAGTTCTCAAGATCTTCTTGG 93802 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| |||| || || || ||| ||||||||||| | | ||||| |||||| Sbjct 93803 AGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGAAGGAAGACGGTCACCG 93862 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 ||||||| ||||||| || ||||| | || ||| | | | || || || ||| ||| Sbjct 93863 CCATGGACGTCGTCTACGCCTTGAAGAGGCAGGGCAGGACCCTCTACGGGTTCGGAGGTT 93922 Query 16698 A 16698 | Sbjct 93923 A 93923 >seq85 Length=391096 Score = 116 bits (128), Expect = 6e-22 Identities = 171/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | ||| || || |||||||| || ||||| ||||| || ||| Sbjct 215091 GCGAAGCGTCACCGGAAGGTTCTACGGGACAACATCCAGGGCATCACGAAGCCGGCGATC 215150 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| ||||| ||||| || || ||||| || || || |||| || |||| Sbjct 215151 CGCCGTCTTGCTCGCCGTGGCGGCGTGAAGCGCATCAGCGGTCTGATCTACGAGGAGACC 215210 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | || | ||||||||| | ||| ||| || | || || || ||| |||||| Sbjct 215211 AGAGGCGTCCTTAAGATCTTCTTGGAGAACGTGATTCGCGACGCCGTCACCTACACCGAG 215270 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || ||||| |||||| | ||||| ||||||| || | || | || ||| Sbjct 215271 CACGCTCGCCGGAAGACCGTCACCGCTATGGACGTCGTCTACGCCCTCAAGAGGCAGGGC 215330 Query 16673 CG 16674 || Sbjct 215331 CG 215332 >seq1558 Length=27088 Score = 111 bits (122), Expect = 2e-20 Identities = 168/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || ||||| |||||||| || || || ||||| ||||| | || ||||||| | || Sbjct 22068 CTCCGAGACAACATCCAGGGGATTACGAAGCCGGCTATAAGGCGATTGGCTCGCAGAGGA 22127 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| || || || |||| || |||| || | || | ||||||||| Sbjct 22128 GGCGTGAAGCGAATCAGCGGTCTGATCTACGAGGAGACCCGAGGGGTCCTCAAGATCTTC 22187 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| ||| || || || ||| |||||||||||| || ||||| ||| Sbjct 22188 CTCGAGAACGTCATCAGAGACGCCGTCACCTACACCGAGCACGCTCGCCGGAAGACCGTC 22247 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| ||||||| ||||||| || | || | || ||||| | |||| || || || Sbjct 22248 ACCGCCATGGACGTCGTCTACGCGCTCAAGAGGCAGGGCCGGACTCTTTACGGGTTCGG 22306 >seq147 Length=293944 Score = 80.6 bits (88), Expect = 4e-11 Identities = 149/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||| ||||| ||||| || || || | || ||||| | || || | Sbjct 285698 GAGACAACATCCAAGGCATCACGAAGCCGGCCATTCGGAGACTCGCTCGCAGAGGAGGCG 285757 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | ||||| || || || |||| || |||| | | || | ||||| || || Sbjct 285758 TGAAGCGAATCAGCGGTCTGATCTACGAGGAGACCAGAGGAGTCCTCAAGATTTTTCTGG 285817 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 | | || |||| || || || ||| || |||||||| | ||||| |||||| Sbjct 285818 AAAATGTCATCCGCGACGCCGTCACCTACACGGAGCACGCCCGGAGGAAGACCGTCACCG 285877 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTA 16676 ||||||| ||||||| || | || | || ||||||| Sbjct 285878 CCATGGACGTCGTCTACGCTCTCAAGAGGCAGGGCCGTA 285916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79049603975535