Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq1 260 2e-64 seq257 208 1e-48 seq716 167 3e-36 seq964 116 5e-21 seq2 102 1e-16 seq139 96.9 4e-15 seq1360 87.8 2e-12 >seq1 Length=1764766 Score = 260 bits (288), Expect = 2e-64 Identities = 270/354 (76%), Gaps = 0/354 (0%) Strand=Plus/Minus Query 138524 ATTTGAACCTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTC 138583 |||| | || ||||||| |||||||| |||||||||||||| |||||||| | ||||| Sbjct 983310 ATTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTC 983251 Query 138584 GCAAATCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGT 138643 ||||||||||| |||||||| ||||| ||||| | || ||||||||| | ||||| Sbjct 983250 CCAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGT 983191 Query 138644 TCCCGTCATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACG 138703 || || | ||| | |||| ||| | |||| | | ||||| ||| | || ||||| Sbjct 983190 ACCAGTAACTGGTTTATGGATGAGTGCTTTTGGAGTAGTCGGTCTGGCTTTGAATCTACG 983131 Query 138704 AGCGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTT 138763 || ||||| ||||| || |||||||| |||||||| |||||||||||||| ||||| | Sbjct 983130 TGCCTATGACTTCGTTTCTCAAGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTG 983071 Query 138764 CTACACCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGATCA 138823 ||||||||| || ||||| | || || ||| | ||||| |||||||| || ||||| Sbjct 983070 CTACACCAAAAATATTCTCTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCA 983011 Query 138824 ACCTCACGAAAACTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 138877 ||||| ||||||||| | || ||||| || || | | | || |||||||| Sbjct 983010 GCCTCATGAAAACTTTATATTCCCTGAGGAGGTTCTATCTCGTGGAAACGCTCT 982957 >seq257 Length=213233 Score = 208 bits (230), Expect = 1e-48 Identities = 262/355 (74%), Gaps = 10/355 (3%) Strand=Plus/Minus Query 138246 AACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCGTGTTCCTGATGTATCCT 138305 || |||||||||||||| | ||| || | ||| || || || |||||||| ||||| Sbjct 14485 AATGCAATCGCATTCTCCGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTGATTTATCCA 14426 Query 138306 TTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAGCAATCTTCCGATTC 138365 | ||||| | ||||||||||||| ||| |||||||| ||||| || || |||||| Sbjct 14425 TAAGGTCAGTTTGGTTGGTTCTTTGCACCCAATTTTGGTGTAGCAGCTATATTTCGATTC 14366 Query 138366 ---CTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCTTTCATATGATGGGC 138422 || || |||| ||||||| |||| ||||| | ||| | ||||| |||||||| Sbjct 14365 ATCCTATTTTTCCA--AGGGTTTT-ATAATTGGACATTGAACTCATTTCACATGATGGGA 14309 Query 138423 GTAGC--AGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTGCTACAGTAGAAA 138480 || || ||||||| |||| |||| |||| ||||||||||||| |||| |||||| Sbjct 14308 GTTGCCGAGGTATTG--GGTGCTGCTATGCTATGTGCTATTCATGACACTACCATAGAAA 14251 Query 138481 ATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTGAACCTACTCAAG 138540 |||| || | |||||||| || |||||| || | ||| | || |||||| Sbjct 14250 ATACCTTATTTGAAGATGATGATGGTGTAAATACATTCCCTACTTTTAACCCAACTCAAA 14191 Query 138541 AAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAATCTTTGG 138595 ||| |||| |||||||||||||| |||||| | | ||||| ||||||||||| Sbjct 14190 CTGAATAAACTTATTCAATGGTTACCGCTAACTGCTTTTGGTCCCAAATCTTTGG 14136 Score = 86.0 bits (94), Expect = 8e-12 Identities = 99/132 (75%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 138410 TCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTGC 138469 ||| |||||||| || || || | | |||| ||||||||| |||||||||||||| | Sbjct 19498 TCACATGATGGGAGTTGCCGGAGTATTGGGTGCTGCTCTGCTATGTGCTATTCATGGCAC 19439 Query 138470 TACAGT-AGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTG 138528 ||| || | |||||| ||| | ||||||||| || ||||||| || || |||| Sbjct 19438 TACCGTAAAAAAATATTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTG 19379 Query 138529 AACCTACTCAAG 138540 | || ||||||| Sbjct 19378 ACCCAACTCAAG 19367 >seq716 Length=92840 Score = 167 bits (184), Expect = 3e-36 Identities = 205/280 (73%), Gaps = 0/280 (0%) Strand=Plus/Minus Query 135835 TGGTATGCCGCTTGGCATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACA 135894 ||||||||| || || || ||| | ||||| |||| ||| |||| || || || || || Sbjct 34196 TGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTTCAAGCTGAGCA 34137 Query 135895 CAACATTCTCATGCATCCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCT 135954 | | || || ||||| || || | ||||| || || ||||| || ||||| || || || Sbjct 34136 CTATATCCTTATGCACCCATTTCTTATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCT 34077 Query 135955 GTTCTCTGCTATGCATGGATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGT 136014 ||| |||||| ||||| || | || ||||||||| | || | | || || || Sbjct 34076 ATTCAGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTGATAAGGAAAACCACAGAAAA 34017 Query 136015 AGAATCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGC 136074 ||||| || | ||||||| ||||||||||| ||||| || || || ||||| || Sbjct 34016 TGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGC 33957 Query 136075 TGCTCATGGTTACTTCGGTCGTCTGATCTTCCAATATGCG 136114 ||||||||||| || || || ||||||||||||||||| Sbjct 33956 CGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCG 33917 >seq964 Length=67008 Score = 116 bits (128), Expect = 5e-21 Identities = 139/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 138571 ACCGTTACTGGTCGCAAATCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCT 138630 |||| | ||||| ||||||||||| ||| |||| ||||| |||||| | || |||| Sbjct 23419 ACCGCTTTTGGTCCCAAATCTTTGGGGTTGTTTTTTCCAATAAACGTTGGTTACATTTCT 23478 Query 138631 TTATGCTCTTTGTTCCCGTCATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTG 138690 ||||| | ||| | || || | ||| | | || ||| | |||| | | ||||| | Sbjct 23479 TTATGTTATTTATACCAGTAACTGGTTTATAGATGAGTGCTCTTGGAGTAGTCGGTCTGG 23538 Query 138691 CTCTTAACCTACGAGCGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTG 138750 || | || |||| || ||||| ||||| || |||||||| | | |||| |||||||||| Sbjct 23539 CTTTGAATTTACGTGCCTATGACTTCGTTTCTCAAGAAATCCATTCAGCGGAAGATCCTG 23598 Query 138751 AATTCGAGA 138759 |||| |||| Sbjct 23599 AATTTGAGA 23607 >seq2 Length=1456787 Score = 102 bits (112), Expect = 1e-16 Identities = 101/130 (78%), Gaps = 7/130 (5%) Strand=Plus/Plus Query 136051 AGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTCGGTCGTCTGATCTTCCAATA 136110 |||||| || || || ||||| |||||||||||||| || || || |||| |||||||| Sbjct 1455406 AGAAGAAACCTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATATTCCAATA 1455465 Query 136111 TGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTTGCTGCTTGGCCTGTTGTCGG 136170 ||| | ||| ||||||| ||||||| ||| | |||||||||||||| || || Sbjct 1455466 TGC-TAGTT------TCCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTGGG 1455518 Query 136171 TATCTGGTTT 136180 ||| |||||| Sbjct 1455519 TATTTGGTTT 1455528 >seq139 Length=308073 Score = 96.9 bits (106), Expect = 4e-15 Identities = 76/91 (84%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 135700 TTACATGGGTCGCGAGTGGGAACTCTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGT 135759 ||| |||||||| ||||||||||| || || ||||||||||||||||||||| ||| Sbjct 89682 TTATATGGGTCGTGAGTGGGAACTTAGTTTCCATCTGGGTATGCGCCCTTGGATTGCTGT 89741 Query 135760 CGCTTACTCAGCCCCTGTTGCCGCTGCTACT 135790 || || ||||| |||||||| ||||||||| Sbjct 89742 TGCATATTCAGCTCCTGTTGCAGCTGCTACT 89772 >seq1360 Length=36616 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 138443 TGCTCTGCTCTGTGCTATTCATGGTGCTACAGTAGAAAATACTTTGTATGAAGATGGCGA 138502 ||||||||| ||||||| |||||| ||| ||||||||||||| | |||| |||| | Sbjct 8661 TGCTCTGCTATGTGCTAGTCATGGCGCTGGCATAGAAAATACTTTATTTGAAAATGGTAA 8720 Query 138503 ACAATCAAATACTTTTAAAGCATTTGAACCTACTCAAGAAGAAGAAACCTATTCAATGGT 138562 ||||||| || | || ||| | || ||||||| |||||||| | ||||||||| Sbjct 8721 TGGCGCAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAAGAAACTTTTTCAATGGT 8780 Query 138563 T 138563 | Sbjct 8781 T 8781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627748250448000