Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq716 179 1e-40 seq2 96.9 1e-15 >seq716 Length=92840 Score = 179 bits (198), Expect = 1e-40 Identities = 207/279 (74%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 19751 TGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACA 19810 |||||||||||| || |||||| ||||||| ||||||||| | ||||| ||||| || || Sbjct 34196 TGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTTCAAGCTGAGCA 34137 Query 19811 CAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCT 19870 | ||||||||||||| || || | ||| | ||||| ||||| |||||||| || || || Sbjct 34136 CTATATCCTTATGCACCCATTTCTTATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCT 34077 Query 19871 TTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGA 19930 ||| |||||| || || ||||| || || | || | | |||| || || | Sbjct 34076 ATTCAGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTGATAAGGAAAACCACAGAAAA 34017 Query 19931 TGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGC 19990 || ||| || | || || | ||||| ||||| ||||| || ||||||||||| || Sbjct 34016 TGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGC 33957 Query 19991 TGCACACGGGTACTTTGGGAGATTGATATTTCAATATGC 20029 || || || || ||||| ||||||| || |||||||| Sbjct 33956 CGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGC 33918 >seq2 Length=1456787 Score = 96.9 bits (106), Expect = 1e-15 Identities = 100/132 (76%), Gaps = 7/132 (5%) Strand=Plus/Plus Query 19968 GAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATAT 20027 ||||| || ||||||||||| ||||| || || || ||||| |||||||||| |||||| Sbjct 1455407 GAAGAAACCTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATATTCCAATAT 1455466 Query 20028 GCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGC 20087 ||| |||| ||||||||||||| ||||| | ||| ||| || || || || Sbjct 1455467 GCTAGTTTC-------CTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTGGGT 1455519 Query 20088 ATATGGCTTACC 20099 || ||| ||||| Sbjct 1455520 ATTTGGTTTACC 1455531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144393581744220