Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq716 141 2e-28 seq168 104 4e-17 >seq716 Length=92840 Score = 141 bits (156), Expect = 2e-28 Identities = 198/278 (71%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 212032 GGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACAT 212091 ||||||||| |||| || || | || |||||||| ||| | ||||| ||||| || || Sbjct 34195 GGTATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTTCAAGCTGAGCAC 34136 Query 212092 AACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTA 212151 | ||||||||||||||||| | |||| |||||| || ||| | ||||| || | || Sbjct 34135 TATATCCTTATGCACCCATTTCTTATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTA 34076 Query 212152 TTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTA 212211 ||| |||||| || ||||| | || || ||| | || | ||||||| | Sbjct 34075 TTCAGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTGATAAGGAAAACCACAGAAAAT 34016 Query 212212 GATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCT 212271 || || || | ||||||| ||||| ||||| ||||| || ||||| || || || Sbjct 34015 GAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGCC 33956 Query 212272 GCACATGGATACTTCGGTAGACTTATCTTCCAGTATGC 212309 || ||||| || || || || | |||||||| ||||| Sbjct 33955 GCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGC 33918 >seq168 Length=274740 Score = 104 bits (114), Expect = 4e-17 Identities = 133/182 (73%), Gaps = 1/182 (1%) Strand=Plus/Plus Query 212371 TGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAAC 212430 ||||| || ||| | ||||| ||| ||||| || ||| ||||||| || || ||||| Sbjct 245247 TGGTTTAC-TCTTTAGGTATTAGCATCATGGCTTTTAACTTAAATGGTTTTAATTTCAAT 245305 Query 212431 CAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGA 212490 |||| || |||||| | |||| || || ||| | || | || | ||||| | Sbjct 245306 CAATTTGTAGTTGATAGTTAAGGTCGTGTAATTAATACCTAGGTTAATATCATTAACCGT 245365 Query 212491 GCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTA 212550 || || |||||||||||||||||||| ||| | ||||| || |||||| | || ||| || Sbjct 245366 GCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCTCTCTAGACCTA 245425 Query 212551 GC 212552 || Sbjct 245426 GC 245427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807272606152200