Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq1 156 5e-33 seq1194 113 5e-20 seq269 96.9 4e-15 seq2 91.5 2e-13 >seq1 Length=1764766 Score = 156 bits (172), Expect = 5e-33 Identities = 238/339 (70%), Gaps = 0/339 (0%) Strand=Plus/Minus Query 172494 GAAGAAACTTATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCA 172553 |||||||||||| ||| |||| |||||| | || ||||| || || ||||| | || Sbjct 983291 GAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCT 983232 Query 172554 TTTTCAAACAAAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGG 172613 ||||| || ||| | | ||||| ||| ||||||| || ||||| || | ||| | ||| Sbjct 983231 TTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGG 983172 Query 172614 ACATCATCTATAGGTATCGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCT 172673 | || | || | || ||||| || | || || | || || ||||| || ||| Sbjct 983171 ATGAGTGCTTTTGGAGTAGTCGGTCTGGCTTTGAATCTACGTGCCTATGACTTCGTTTCT 983112 Query 172674 CAAGAGATAAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTT 172733 ||||| || | ||||| ||||| || || ||||| || | |||||| || || ||||| Sbjct 983111 CAAGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTGCTACACCAAAAATATTCTC 983052 Query 172734 CTTAATGAAGGTATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTG 172793 | || || ||||| | || |||||| | || ||||| || ||||| |||||| | Sbjct 983051 TTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACTTTATA 982992 Query 172794 TTCCCAGAAGAAGTCTTGCCACGAGGCAACGCACTATAA 172832 ||||| || || || | | || || ||||| || ||| Sbjct 982991 TTCCCTGAGGAGGTTCTATCTCGTGGAAACGCTCTTTAA 982953 >seq1194 Length=46772 Score = 113 bits (124), Expect = 5e-20 Identities = 209/307 (68%), Gaps = 0/307 (0%) Strand=Plus/Minus Query 171807 GATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGTCTTTTACTTTTA 171866 ||||| || ||| || || |||||||| || | | ||||| ||||| || || || Sbjct 21587 GATGACTGATTACGGAAGGACCGTTTCGTTTTTGTAGATTGGTCCGGTCTATTGCTATTT 21528 Query 171867 CCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTCGTGACCTCATGG 171926 |||||| || | | | |||||||||||| |||| | || || || || ||||| Sbjct 21527 TTTTGTGCCTATTTCACTTTAGGAGGTTGGTTCATAGGTATAACCTTTGTAACTTCATGC 21468 Query 171927 TACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTTTTAACTGCAGCAGTA 171986 || || ||||| | ||| || ||| | || | ||||| |||||||| | ||| Sbjct 21467 TATACTCATGGATTAGCAAGTTCCTATTTGGAATAATACAACTTCTTAACTGCCGTAGTT 21408 Query 171987 TCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGGGGACCTGAGGCACAA 172046 || || || | | || | | | || | | ||| | ||| |||| ||||| |||||| Sbjct 21407 TCGACTCCCGTTAATAGTTTTGCACACTCTTTGTTGCTACTAGGGGGTCCTGAAGCACAA 21348 Query 172047 GGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTAGCATTACATGGA 172106 || ||| || | |||| |||||||||||| || |||| ||||| ||| | || || Sbjct 21347 GGCGATTTTACTCATTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCACTCCACGGT 21288 Query 172107 GTCTTTG 172113 | |||| Sbjct 21287 GCTTTTG 21281 >seq269 Length=207462 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 171807 GATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGTCTTTTACTTTTA 171866 |||||||||||| ||| || |||||||| || | || ||||| ||||| || || || Sbjct 67660 GATGATTGGTTATGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTT 67601 Query 171867 CCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTCGTGACCTCATGG 171926 |||||||| || | || | ||||||||||||| ||| || || || || |||||| Sbjct 67600 CCTTGTGCCTATTTCGCTTTAGGAGGTTGGTTCGCAGGTACAGTCTTTGTAACTTCATGG 67541 Query 171927 --TACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTTTTAACTGCAGCAG 171984 ||| | ||||| | ||| || ||| | || ||| ||||| || |||| |||| Sbjct 67540 TATACTCTCATGGATTAGCAAGTTCCTATTTGGAAGGATGCAACTTCTTGCCTGCCGCAG 67481 Query 171985 TATCAACACC 171994 | || || || Sbjct 67480 TTTCTACTCC 67471 >seq2 Length=1456787 Score = 91.5 bits (100), Expect = 2e-13 Identities = 105/142 (74%), Gaps = 7/142 (5%) Strand=Plus/Plus Query 171343 AGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTA 171402 ||||||||| ||||| ||||| ||||||||||| || || || |||| || ||||| || Sbjct 1455406 AGAAGAAACCTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATATTCCAATA 1455465 Query 171403 TGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTG 171462 ||| ||| ||||||| |||||||||||| | |||| | |||||||| | Sbjct 1455466 TGCTAGTTTC-------CTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTGGG 1455518 Query 171463 TGTATGGTTAACCTCTATGGGT 171484 | | ||||| ||| || | ||| Sbjct 1455519 TATTTGGTTTACCGCTTTTGGT 1455540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570069241561800