Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq19 93.3 4e-14 >seq19 Length=713669 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23984 AAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGA 24043 ||| || ||||| | || || ||||| | || || || | || || |||| ||||| Sbjct 623979 AAAAAATATGCAGATCTTCGTCAAAACCCTCACCGGCAAGACCATCACTCTCGAGGTCGA 623920 Query 24044 GGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCC 24103 | | |||||||||||| | ||||| ||||| ||||| || || || ||||| Sbjct 623919 GAGCTCCGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGGATTCCTCC 623860 Query 24104 CGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGA 24163 || || ||| | ||||| | || ||||||||| ||||| || | | | | | || ||| Sbjct 623859 GGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGGACCCTCGCCGA 623800 Query 24164 TTATAACATTCAAAAAGAATCTAC 24187 ||| ||||| || || || ||||| Sbjct 623799 TTACAACATCCAGAAGGAGTCTAC 623776 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| |||| ||||| |||| ||| | || || ||| | | Sbjct 623516 ATGCAGATATTTGTGAAAACCCTAACCGGAAAGACGATCACCCTGGAGGTGGAGAGCTCC 623457 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| || || ||||| || ||||| || || Sbjct 623456 GACACCATCGACAACGTCAAGGCCAAGATCCAGGATAAGGAAGGGATTCCTCCGGACCAG 623397 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | || ||| ||||| || || || | | ||| | || ||| || ||| Sbjct 623396 CAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAGGACGGCCGAACCCTCGCCGACTACAAC 623337 Query 24171 ATTCAAAAAGA 24181 || || || || Sbjct 623336 ATCCAGAAGGA 623326 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| |||| || || | || || |||| |||||| | Sbjct 628936 AATATGCAGATCTTCGTCAAAACCCTAACCGGCAAGACCATAACTCTCGAGGTCGAGAGC 628877 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | ||||| ||||| ||||| ||||| || || || || Sbjct 628876 TCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCGCCGGAC 628817 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| | ||||| | || || ||||| |||||||| | | | | | || |||||| Sbjct 628816 CAGCAGCGTCTGATCTTCGCTGGAAAGCAGCTCGAAGACGGCCGGACCCTCGCCGATTAC 628757 Query 24168 AACATTCAAAAAGAATCTAC 24187 ||||| || || || || || Sbjct 628756 AACATCCAGAAGGAGTCCAC 628737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429789310539225