Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq19 113 4e-20 seq168 111 1e-19 seq6 111 1e-19 seq1067 105 5e-18 seq207 100 2e-16 seq420 98.7 8e-16 >seq19 Length=713669 Score = 113 bits (124), Expect = 4e-20 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||| || || | || |||| ||| || ||| |||||| || |||||||||||||| Sbjct 623289 CCCTCCACGGAGACGGAGCACCAGATGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGC 623348 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | |||| | ||||||||| || || || || | || || ||||| |||||| ||| Sbjct 623349 GAGGGTTCGGCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAGG 623408 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | || || || || || || || ||| || | | | | |||||| | |||| Sbjct 623409 AATCCCTTCCTTATCCTGGATCTTGGC--CTTGACGTTGTCGATGGTGTCGGAGCTCTCC 623466 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||| || |||||||| || ||||| ||||| |||||||| Sbjct 623467 ACCTCCAGGGTGATCGTCTTTCCGGTTAGGGTTTTCACAAATATCTGCAT 623516 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || ||| |||||| || ||||||||||| || | ||| ||||| Sbjct 623077 AGCACCAGATGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCCGCGAGGGTGCGACCGTCC 623136 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||||| || || | ||||||| ||| |||||| || | || || ||||| Sbjct 623137 TCAAGCTGTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGGGGGAATACCTTCCTTGTCC 623196 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || ||| ||||| | | | | |||||| | ||| || | |||||| | Sbjct 623197 TGGATCTTGGCT--TTCACGTTGTCGATGGTGTCGGAGCTCTCGACCTCAAGGGTGATCG 623254 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||| || ||||| |||||||||||||| Sbjct 623255 TCTTGCCGGTGAGGGTTTTCACAAAAATCTGCAT 623288 >seq168 Length=274740 Score = 111 bits (122), Expect = 1e-19 Identities = 152/207 (73%), Gaps = 8/207 (4%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || |||||||| || || |||||||| |||| ||| | ||||||| | || Sbjct 145726 TGGAGGGTAGACTCCTTCTGGATATTGTAGTCCGCCAGGGTCCTCCCGTCCTCGAGCTGC 145785 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAAT--TT 16850 ||||| || |||| |||| ||| |||||| ||| | |||||| ||||| ||| || Sbjct 145786 TTGCCAGCGAAAATCAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTT 145845 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTC-CGTT-TCCACGGTGATGGTTTTTCC 16908 || |||||| | | | | ||||| || |||| || |||| ||||||||| || || Sbjct 145846 GC--CTTCACATTGTCGATGGTGTC--CGAGCTCTCGACCTCCAAGGTGATGGTCTTCCC 145901 Query 16909 GGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| || || || || ||||||||||| Sbjct 145902 GGTGAGGGTCTTAACGAAAATCTGCAT 145928 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | || |||| || || || |||||||| || ||||||||||| ||| Sbjct 146158 CCACCACGAAGACGCAACACCAAGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCAGCC 146217 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||| | ||||||||||||| | || | || ||| ||||| || Sbjct 146218 AGGGTACGTCCATCCTCGAGTTGTTTGCCCGCAAAGATCAACCTCTGCTGGTCTGGTGGG 146277 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||| ||||| ||| | ||| || | | | | |||||| | || Sbjct 146278 ATGCCCTCCTTGTCTTGAATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTTTCAACC 146337 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| |||||||| || || || |||||||||||||| Sbjct 146338 TCCAAGGTGATGGTCTTTCCGGTGAGAGTCTTAACAAAAATCTGCAT 146384 Score = 104 bits (114), Expect = 2e-17 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| || || || |||||||| || ||||||||||| || Sbjct 145930 CCACCACGCAGACGCAGCACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCTGCA 145989 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| || | ||||| | || ||||| || | || | || ||| ||||| || Sbjct 145990 AGGGTCCTGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGG 146049 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTC-CG- 16886 | ||||| ||||| ||||| |||||| | | | | |||| ||| |||| || Sbjct 146050 ATACCCTCCTTGTCCTGAATTTTGGCCTTCACGTTGTCAATGGTGT--CCGAGCTCTCGA 146107 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||| |||||||| |||||||||| || || || |||||||||||| Sbjct 146108 CTTCCAAAGTGATGGTCTTTCCGGTCAAGGTCTTCACGAAAATCTGCATT 146157 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| ||| || ||||||||||| || |||||||||||||| Sbjct 146614 CCTCCACGAAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 146673 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| ||||||| | || ||||| ||| | || || | ||| ||||| || Sbjct 146674 AGGGTTCGCCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGGTCTGGGGGG 146733 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||| ||||| |||| ||| || | | | | |||||| | ||| Sbjct 146734 ATGCCCTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCAACC 146793 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||||||| ||||| || || || || || || ||||| Sbjct 146794 TCGAGGGTGATGGTTTTCCCGGTGAGGGTCTTAACGAAGATTTGCAT 146840 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || || | || |||| || || ||||||||||| || ||||||||||| || Sbjct 146841 CCCACCACGGAGGCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 146900 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | |||| | ||||||| | |||||||| || | || |||| ||| |||||| || Sbjct 146901 GAGGGTTCGGCCGTCCTCAAGCTGTTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGTGG 146960 Query 16828 CACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||||| ||||| || || ||| || || | | | ||||| | ||| Sbjct 146961 GATACCCTCCTTGTCTTGAATCTTAGCT--TTGACATTATCGATGGTGTCAGAGCTTTCC 147018 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || ||||| || ||||| || || |||||||| Sbjct 147019 ACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTTTTCACGAAGATCTGCAT 147068 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || || | || |||| || || ||||| || || || |||||||||||||| Sbjct 146385 CCCACCACGGAGACGGAGCACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGGC 146444 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | |||| | | ||||| | || || || || | || | | ||| ||||| || Sbjct 146445 GAGGGTTCGGCCATCCTCGAGCTGCTTACCGGCGAAGATCAATCTCTGCTGGTCTGGGGG 146504 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | |||||| ||||| || || ||| || || | | | | |||||| | || Sbjct 146505 GATGCCCTCCTTGTCCTGGATCTTGGCT--TTGACATTGTCAATGGTGTCGGAGCTTTCT 146562 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| |||||||||||| ||||| || || |||||||| || |||||| Sbjct 146563 ACCTCCAAGGTGATGGTTTTCCCGGTGAGGGTCTTGACAAATATTTGCATT 146613 >seq6 Length=1122688 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| || | || |||| || |||||||||||||| || |||||||||||||| Sbjct 399114 CCTCCTCTGAGGCGGAGAACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCG 399173 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| | || || || || | || || ||||| ||||| ||| Sbjct 399174 AGGGTCCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGG 399233 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || ||| || | | | | ||||||| || ||| Sbjct 399234 ATACCCTCCTTGTCTTGGATCTTGGC--CTTGACATTGTCGATAGTGTCGGAGGACTCGA 399291 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||| ||||| ||||| || || ||||| || || |||||||| Sbjct 399292 CCTCCAAGGTTATGGTCTTTCCCGTTAGGGTTTTCACGAAGATCTGCAT 399340 >seq1067 Length=57296 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || |||||||| || |||| || | | |||||||| || Sbjct 36965 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCCAAAGTCCTTCCATCCTCCAACTGC 37024 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| |||| | || ||| ||||| || | |||||| ||||| ||||| | Sbjct 37025 TTCCCTGCAAAAATCAACCTCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGAATTTTC 37084 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | |||||||| | |||| |||| |||||| || || || ||| Sbjct 37085 GCCTTCACATTGTCGACAGTGTCCGAGCTCTCCACCTCCAAGGTGATCGTCTTCCCAGTC 37144 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 | || || || || |||||||| Sbjct 37145 AAGGTCTTCACGAAGATCTGCAT 37167 >seq207 Length=245090 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| || |||||||||||||| | |||| | ||||| Sbjct 172624 AGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCGTCC 172565 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| || || || ||| | || || ||||| |||||| || | ||||| || || Sbjct 172564 TCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGCGGAATCCCCTCCTTATCC 172505 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || | | |||||| | | | | ||||| || ||| || | ||| ||||| Sbjct 172504 TGGATCTTCGCCTTCACATTGTCGATGGTGTCCGAGGACTCGACCTCTAGGGTTATGGTC 172445 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || || || || ||||| || || |||||||| || Sbjct 172444 TTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 172410 >seq420 Length=153407 Score = 98.7 bits (108), Expect = 8e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || ||||| |||||||| || |||||||||||||| | ||| | ||||| Sbjct 119110 AGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCGGCCGTCC 119169 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGT-C 16842 || | || ||||| || | || || ||||| |||||| || | ||||| |||| | Sbjct 119170 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATTCCCTCCTTGTCC 119229 Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 | | ||| | |||||| | | | | |||||| || ||| || | ||| ||||| Sbjct 119230 TGGATCTTGGT-CTTCACATTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTTATGGT 119288 Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || || ||||| || || |||||||| Sbjct 119289 CTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 119321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404949788405050