Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq73 109 4e-19 seq871 105 4e-18 seq168 91.5 1e-13 seq6 82.4 5e-11 >seq73 Length=429014 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| || |||||||||||||||||||||| ||||||| ||| || ||||| || Sbjct 41799 AAGCCCATTACCTTGGCTGTGGTTTCGCTAGACAGTAGATTGGGACGGTGGGAATCTGGT 41740 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||| || |||||||||| ||||||||||||||||| Sbjct 41739 TAACCCATTCATGCGCGCCACTAATTAGATGACGA 41705 >seq871 Length=75021 Score = 105 bits (116), Expect = 4e-18 Identities = 79/93 (85%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||| | |||||||| |||| || ||| |||| Sbjct 33985 AAGCCCGTTCCCTTGGCTGTGGTTTCGTTGAATAGTAGACAGGGACAGTGGGAATTTCGT 33926 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 ||||| ||||||| |||||||||||||||||| Sbjct 33925 TAATCTATTCATGCTCGTCACTAATTAGATGAC 33893 Score = 93.3 bits (102), Expect = 3e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 19944 TTTCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 20003 || |||||| |||||||| ||||||| ||||| ||||||||||||||| ||||||||||| Sbjct 32013 TTACTCTCTTTTCAAAGTCCTTTTCATCTTTCTCTCACGGTACTTGTTTGCTATCGGTCT 31954 Query 20004 CGCGGTAATATTTAGCCTT 20022 | | | ||||||||||| Sbjct 31953 CTCACTGGTATTTAGCCTT 31935 >seq168 Length=274740 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | |||||||||||| |||||||| |||||| || || ||||| | Sbjct 146154 CATT-CCACCACGAAGACGCAACACCAAGTGAAGAGTTGACTCCTTCTGGATGTTGTAGT 146212 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 ||| || |||| | || || | |||||| || ||||| || | | || || || | Sbjct 146213 CAGCCAGGGTACGTCCATCCTCGAGTTGTTTGCCCGCAAAGATCAACCTCTGCTGGTCTG 146272 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||| || ||||| ||| || ||| ||||| | | || || |||| Sbjct 146273 GTGGGATGCCCTCCTTGTCTTGAATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTTT 146332 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || || || || || || || | || || || || |||||||| Sbjct 146333 CAACCTCCAAGGTGATGGTCTTTCCGGTGAGAGTCTTAACAAAAATCTGCAT 146384 >seq6 Length=1122688 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || ||||| | || | ||||| ||||| ||| |||||| || || ||||| || | Sbjct 399114 CCTCCTCTGAGGCGGAGAACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCG 399173 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || |||| || | || |||||||| || || ||||| || || |||| ||| Sbjct 399174 AGGGTCCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGG 399233 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || || ||||| || || ||| ||||| | || ||| || || || Sbjct 399234 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATAGTGTCGGAGGACTCGACC 399293 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || || || || || ||||| | |||||||||||| ||||||||| Sbjct 399294 TCCAAGGTTATGGTCTTTCCCGTTAGGGTTTTCACGAAGATCTGCATG 399341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334832919678845