Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq143 109 7e-19 >seq143 Length=298601 Score = 109 bits (120), Expect = 7e-19 Identities = 377/580 (65%), Gaps = 10/580 (2%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || |||||||||||||| | |||||||||| || || |||||||| || |||||| Sbjct 58210 CACGCGAAATCGCAGTGCAAGCCCTCGTCTCGCGAGATCAACTCGTTGGAGAAGGTGAGT 58151 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 32779 || ||||| | || ||||| || ||||| || |||| |||| || ||| || ||||| Sbjct 58150 CCCGGCATCAACCCGCGCTTCTTTAGCCAGAAGATGG-CGCAGAAGCTTCCGGAGAAGAA 58092 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCGCTGTCATG 32836 || ||||| || || ||||| || || | ||| | | || ||| || ||| Sbjct 58091 GATCCCTTCGACGCAGGCGAAGGCGATGAGGCGCTCGGCGAAGGACTCGGAGCCGTC--- 58035 Query 32837 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 32896 ||||| | ||||| | ||||||||| || ||||| | || || || || Sbjct 58034 GATCCAGCGGAGGGCCCACTGGGCCTTCTTCGCGACGCAAGGGACAGTGTCGATGGCGCG 57975 Query 32897 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 32956 ||||| | | || || ||| || | || || || | | || || ||||| Sbjct 57974 GAAGAGGCGGCTCTTCTCGGCGGAATCCTTGATGTAGGTCTCGAGGAGGAGGCTGTACAT 57915 Query 32957 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAAT 33016 ||| || || ||||| || ||||| || || || ||||||||| | ||||| | | Sbjct 57914 TTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGCGAC 57855 Query 33017 CTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 33076 ||| || || | || | | || | ||| || || || ||||| ||| || Sbjct 57854 CTGGACCTCCTTCATGAACCCACCGGCGAGATTCTCTAGGACGATGCCGTCGGAGGCGGC 57795 Query 33077 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA-T 33135 || || || | || || | || || | || ||||| || || || ||| || | Sbjct 57794 GAAGAAGGCGAGGACGTGGGTGATGAAGTGCTTCTCGTCGGGGGTGAG-GGCTTCGAACT 57736 Query 33136 CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 33195 ||| || | || | || || || || | |||||||| || ||||| ||||| | Sbjct 57735 GGCGGATGTCCTGGGAGAGGTCGACCTCCTCGGCGGTCCAAAACGAGGCCTCGGCCTTCT 57676 Query 33196 TATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 33235 | ||||| | |||||| || | || || || || || || Sbjct 57675 TGTACATCTCCCAGATCTCCGGGTACTGGATCGGGAACAT 57636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633410268402000