Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq19 107 2e-18 seq168 98.7 9e-16 seq6 86.0 5e-12 >seq19 Length=713669 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||| | || || || | ||||| |||| || ||| || Sbjct 623061 AATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTTGAGAGCTC 623002 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| ||||| || ||| ||||| || ||||||||||| ||||| Sbjct 623001 GGACACAATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGGATTCCACCGGACCA 622942 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || |||||||| || || || || |||| |||||| | | |||||||| Sbjct 622941 GCAGCGTCTGATCTTTGCCGGGAAGCAGTTGGAGGATGGTCGCACCCTTGCTGATTACAA 622882 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||| || || || || || || || Sbjct 622881 TATCCAGAAGGAGTCTACCCTCCA 622858 >seq168 Length=274740 Score = 98.7 bits (108), Expect = 9e-16 Identities = 153/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||||||||| ||||| | ||||| ||| ||||||| | || || || || Sbjct 146613 AATGCAAATATTTGTCAAGACCCTCACCGGGAAAACCATCACCTTGGAGGTAGAAAGCTC 146554 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || || || |||| || | || ||||| || || || || || || Sbjct 146553 CGACACCATTGA--CAATGTCAAAGCCAAGATCCAG-GACAAGGAGGGCATCCCCCCAGA 146497 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| | | || || ||||| || || | || |||| || || | | ||| || Sbjct 146496 CCAGCAGAGATTGATCTTCGCCGGTAAGCAGCTCGAGGATGGCCGAACCCTCGCCGACTA 146437 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| ||||| ||||||||||| || || || ||||| Sbjct 146436 CAACATTCAGAAAGAATCCACCCTTCACTTGGTGCT 146401 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | ||||| ||| ||||||| |||| || ||| || Sbjct 146840 ATGCAAATCTTCGTTAAGACCCTCACCGGGAAAACCATCACCCTCGAGGTTGAGAGCTCC 146781 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| |||||| ||||| || || || || || ||||| Sbjct 146780 GACACCATTGACAACGTCAAGGCCAAAATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 146721 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | | || ||||||||||| || | || || | || || | | ||| ||||| Sbjct 146720 CAGAGACTCATCTTTGCCGGCAAGCAGCTCGAGGACGGGCGAACCCTCGCCGACTACAAC 146661 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || || ||||| || ||||| ||||| | || | ||||||| Sbjct 146660 ATCCAGAAGGAGTCCACCCTCCATTTGGTGCTCCGTCTTCGTGGAGGAA 146612 Score = 96.9 bits (106), Expect = 3e-15 Identities = 156/221 (71%), Gaps = 9/221 (4%) Strand=Plus/Minus Query 24995 AACA-ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 |||| ||||| || || || || ||| | ||||| || ||||||| |||| ||||| Sbjct 147073 AACAGATGCAGATCTTCGTGAAAACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAAA 147014 Query 25054 CGTCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCA 25109 |||||||| ||||| |||| |||| || | ||| ||||| || || || ||| Sbjct 147013 GCTCTGACACCATCGATAATGTCA---AAGCTAAGATTCAA-GACAAGGAGGGTATCCCA 146958 Query 25110 CCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGC 25169 || ||||| ||| || | || || ||||||||||| | || || | || || | | Sbjct 146957 CCGGACCAGCAGAGGCTGATCTTCGCCGGCAAACAGCTTGAGGACGGCCGAACCCTCGCT 146898 Query 25170 GATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || || || || ||||| || || || ||||| Sbjct 146897 GACTACAACATCCAGAAGGAGTCCACCCTCCACTTGGTGCT 146857 >seq6 Length=1122688 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | || || || |||| || | || || ||||| || Sbjct 399340 ATGCAGATCTTCGTGAAAACCCTAACGGGAAAGACCATAACCTTGGAGGTCGAGTCCTCC 399281 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||||||||| || || ||| || ||| ||||| || || || || || |||| Sbjct 399280 GACACTATCGA--CAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCCGACC 399223 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || || ||||| || || | || || | || || | | ||| |||| Sbjct 399222 AGCAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGGACCCTCGCCGACTACA 399163 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 | || || || || |||||||| || || || || | || ||||||||| Sbjct 399162 ACATCCAGAAGGAGTCCACGCTTCACTTGGTTCTCCGCCTCAGAGGAGGA 399113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433180153225925