Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq1 215 6e-51 seq257 170 2e-37 seq716 149 7e-31 seq168 132 5e-26 seq272 111 2e-19 seq2 100 3e-16 >seq1 Length=1764766 Score = 215 bits (238), Expect = 6e-51 Identities = 254/344 (74%), Gaps = 0/344 (0%) Strand=Plus/Minus Query 167969 ACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTGGTCTCAAATTTTT 168028 ||||| | || ||||||||||| ||||| || |||||||| || ||||| ||||| ||| Sbjct 983300 ACTCAAGCTGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATCTTT 983241 Query 168029 GGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTTCGTTCCTGTCATG 168088 || ||||||| |||||| ||||||| || ||||||||| | || || || || | Sbjct 983240 GGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACT 983181 Query 168089 GGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCTTCGTGCTTATGAC 168148 || | |||| ||| || |||| | ||||||| || | ||||| ||||| |||||| Sbjct 983180 GGTTTATGGATGAGTGCTTTTGGAGTAGTCGGTCTGGCTTTGAATCTACGTGCCTATGAC 983121 Query 168149 TTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAACTTTCTATACGAAA 168208 || || ||||| ||| | | ||||| || ||||| || ||||| |||| ||| || ||| Sbjct 983120 TTCGTTTCTCAAGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTGCTACACCAAA 983061 Query 168209 AACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAACCACATGAA 168268 || || ||| | || || || | ||||| |||||||| | ||| || || |||||| Sbjct 983060 AATATTCTCTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 983001 Query 168269 AACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 168312 |||||| ||||||| || || || | | | || |||||||| Sbjct 983000 AACTTTATATTCCCTGAGGAGGTTCTATCTCGTGGAAACGCTCT 982957 >seq257 Length=213233 Score = 170 bits (188), Expect = 2e-37 Identities = 250/352 (71%), Gaps = 4/352 (1%) Strand=Plus/Minus Query 167681 AATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTTTGTGTCTGTTTTTCTCATCTATCCT 167740 ||||| || || || || | ||| |||| ||| ||||| ||||| || || || ||||| Sbjct 14485 AATGCAATCGCATTCTCCGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTGATTTATCCA 14426 Query 167741 CTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTTTGGTGTTGCAGCGATATTTAGATTC 167800 || |||| |||||||||||||||| |||||||| ||||| |||||| ||||| Sbjct 14425 TAAGGTCAGTTTGGTTGGTTCTTTGCACCCAATTTTGGTGTAGCAGCTATATTTCGATTC 14366 Query 167801 CTACTATTCCTACAGGGTTTCCATAACTGGACGCTCAACCCTTTCCATATGATGGGAGTT 167860 | ||||| | || || || |||| ||||| | ||| | || || |||||||||||| Sbjct 14365 ATCCTATTTTTCCAAGGGTTTTATAATTGGACATTGAACTCATTTCACATGATGGGAGTT 14306 Query 167861 GC--TGGTATCCTAGGCGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATA 167918 || ||||| | || | ||| |||| | ||| || |||| ||| |||| |||| Sbjct 14305 GCCGAGGTAT--TGGGTGCTGCTATGCTATGTGCTATTCATGACACTACCATAGAAAATA 14248 Query 167919 CTCTGTATGAAGATGGTGAGCAAGCAAACACTTTCAAAGCATTTGATACGACTCAGGAAG 167978 | | | |||||||| ||| | ||| || ||| | ||| | | ||||| | Sbjct 14247 CCTTATTTGAAGATGATGATGGTGTAAATACATTCCCTACTTTTAACCCAACTCAAACTG 14188 Query 167979 AGGAAACTTATTCCATGGTCACTGCTAACCGATTCTGGTCTCAAATTTTTGG 168030 | |||||||||| ||||| || |||||| | || ||||| ||||| ||||| Sbjct 14187 AATAAACTTATTCAATGGTTACCGCTAACTGCTTTTGGTCCCAAATCTTTGG 14136 >seq716 Length=92840 Score = 149 bits (164), Expect = 7e-31 Identities = 200/276 (72%), Gaps = 2/276 (1%) Strand=Plus/Minus Query 166519 ATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAAC 166578 ||||| || || ||| | | || ||||||| ||| |||| || ||||| |||||| | Sbjct 34192 ATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTTCAAGCTGAGCACTAT 34133 Query 166579 ATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGTGTATTCGGTGGGTCACTTTTC 166638 ||||| |||||||| || | |||| | |||||||| ||||||||||| || || || ||| Sbjct 34132 ATCCTTATGCACCCATTTCTTATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTC 34073 Query 166639 TCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCTCG-TCCGTGAGACCACTGAAACTGA 166697 || || || || | || || | || | | | | | | ||||| |||| ||| Sbjct 34072 AGTGCTATACATGGTTCCTTGGTAACCT-CTAGTTTGATAAGGAAAACCACAGAAAATGA 34014 Query 166698 GTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTGGCTGC 166757 ||| || | ||||||| || |||||||| ||||| ||||| || || || || || Sbjct 34013 ATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGCCGC 33954 Query 166758 TCATGGTTACTTCGGTCGCCTGATCTTCCAATACGC 166793 ||||||||| || || || ||||||||||||| || Sbjct 33953 TCATGGTTATTTTGGCCGATTGATCTTCCAATATGC 33918 >seq168 Length=274740 Score = 132 bits (146), Expect = 5e-26 Identities = 150/200 (75%), Gaps = 1/200 (1%) Strand=Plus/Plus Query 166842 TGTTGTCGGTATCTGGTTTACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGG 166901 ||| || ||||| ||||||||| || | ||| |||||| |||||| || ||| | || || Sbjct 245234 TGTAGTAGGTATTTGGTTTACT-CTTTAGGTATTAGCATCATGGCTTTTAACTTAAATGG 245292 Query 166902 TTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGA 166961 ||| || ||||| || | | | ||| || | |||||||| | || || | || | Sbjct 245293 TTTTAATTTCAATCAATTTGTAGTTGATAGTTAAGGTCGTGTAATTAATACCTAGGTTAA 245352 Query 166962 TGTCCTCAACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTT 167021 | || | ||||||||| ||| ||||||||||| ||||| || ||||||||||| ||||| Sbjct 245353 TATCATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTT 245412 Query 167022 CCCTCTGGATCTTGCTGCTG 167041 | |||| || || || |||| Sbjct 245413 CTCTCTAGACCTAGCGGCTG 245432 >seq272 Length=206342 Score = 111 bits (122), Expect = 2e-19 Identities = 176/247 (71%), Gaps = 9/247 (4%) Strand=Plus/Minus Query 167693 TTTTCTGGTCCGATTGCTGTCTTTGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCC 167752 || || | ||| |||| ||| |||| ||||| || | || ||||| | | ||||| Sbjct 146893 TTCTCCGCTCCAATTGTTGTTTTTGGTTCTGTATTCTTGATTTATCCGTTAGTTCAGTC- 146835 Query 167753 AGTTGGTTCTTTGCACCGTCGTTTGGTGTTGCAGCGATATTTAGATT--CCTACTATTCC 167810 ||||| ||| |||| ||| | || | ||| ||||| |||| || || || | Sbjct 146834 ---TGGTTTTTTACACCCAGTTTTAGCGTAGTAGCTATATTACGATTTACCCTCTTTTTC 146778 Query 167811 TACAGGGTTTCCATAACTGGACGCTCAACCCTTTCCATATGATGGGAGTTGCTGGTATCC 167870 | |||||||| |||| |||| | ||||| || || ||||||||||||||||| | Sbjct 146777 CA-AGGGTTTC-ATAATTGGAAATTTAACCCATTTCACATGATGGGAGTTGCTGGGGTAT 146720 Query 167871 TAGGCGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATACTCTGTATGAAG 167930 ||| | |||| |||| | ||| |||||||| | || ||||| |||||| | | ||||| Sbjct 146719 TAGT-GTTGCACTGCTATGTGCTATCCATGGCGCTATCGTAGACAATACTTTATTTGAAG 146661 Query 167931 ATGGTGA 167937 ||||||| Sbjct 146660 ATGGTGA 146654 >seq2 Length=1456787 Score = 100 bits (110), Expect = 3e-16 Identities = 107/142 (75%), Gaps = 7/142 (5%) Strand=Plus/Plus Query 166731 AGAAGAGACCTACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATA 166790 |||||| ||||| || || || |||||||||||||| || || || |||| |||||||| Sbjct 1455406 AGAAGAAACCTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATATTCCAATA 1455465 Query 166791 CGCTTCCTTCAACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGG 166850 ||| ||| |||| || | ||||||||| | || || |||||||| || || Sbjct 1455466 TGCTAGTTTC-------CTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTGGG 1455518 Query 166851 TATCTGGTTTACTGCTCTTGGT 166872 ||| |||||||| ||| ||||| Sbjct 1455519 TATTTGGTTTACCGCTTTTGGT 1455540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567033504252000