Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq168 138 9e-28 seq19 125 6e-24 seq6 104 2e-17 seq420 95.1 1e-14 seq1067 91.5 1e-13 >seq168 Length=274740 Score = 138 bits (152), Expect = 9e-28 Identities = 157/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || || || |||||| | ||||| || || |||| || || ||||||| | Sbjct 147070 AGATGCAGATCTTCGTGAAAACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAAAGCT 147011 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | || ||| | || || ||||| || |||||||||||||||||||| ||||| || | Sbjct 147010 CTGACACCATCGATAATGTCAAAGCTAAGATTCAAGACAAGGAGGGTATCCCACCGGACC 146951 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || | || || || |||||||||||| | ||||| ||| ||| || | || |||| Sbjct 146950 AGCAGAGGCTGATCTTCGCCGGCAAACAGCTTGAGGACGGCCGAACCCTCGCTGACTACA 146891 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGT 22427 |||| || || || |||||| | || || || Sbjct 146890 ACATCCAGAAGGAGTCCACCCTCCACTTGGT 146860 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | ||||| ||||| |||| | || || |||| | || Sbjct 146612 ATGCAAATATTTGTCAAGACCCTCACCGGGAAAACCATCACCTTGGAGGTAGAAAGCTCC 146553 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || ||||| || || || ||||||||||| || || || || || Sbjct 146552 GACACCATTGACAATGTCAAAGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 146493 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || ||||| || ||| | |||||| ||| ||| || |||| |||||| Sbjct 146492 CAGAGATTGATCTTCGCCGGTAAGCAGCTCGAGGATGGCCGAACCCTCGCCGACTACAAC 146433 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 ||||| |||||||||||| | || || || Sbjct 146432 ATTCAGAAAGAATCCACCCTTCACTTGGT 146404 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||| || ||||| || | ||||| ||||| |||| || || || || | | | Sbjct 146841 GATGCAAATCTTCGTTAAGACCCTCACCGGGAAAACCATCACCCTCGAGGTTGAGAGCTC 146782 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| ||| | ||| | |||| ||||| || ||||||||||| || || || || || Sbjct 146781 CGACACCATTGACAACGTCAAGGCCAAAATCCAGGACAAGGAGGGCATCCCCCCAGACCA 146722 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || ||||||||||| ||| | ||||| || ||| || |||| ||||| Sbjct 146721 GCAGAGACTCATCTTTGCCGGCAAGCAGCTCGAGGACGGGCGAACCCTCGCCGACTACAA 146662 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||| || || || |||||| | ||||| || | || | || ||||| Sbjct 146661 CATCCAGAAGGAGTCCACCCTCCATTTGGTGCTCCGTCTTCGTGGAGG 146614 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| ||||||||||| ||| | ||||| || || |||| | || || |||| | | Sbjct 146385 GATGCAGATTTTTGTTAAGACTCTCACCGGAAAGACCATCACCTTGGAGGTTGAAAGCTC 146326 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| ||| | ||| || |||| || ||||||||||||||||| || ||||| || || Sbjct 146325 CGACACCATTGACAATGTCAAGGCCAAGATTCAAGACAAGGAGGGCATCCCACCAGACCA 146266 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || ||||| |||||||| | |||||| || ||| | | || ||||| Sbjct 146265 GCAGAGGTTGATCTTTGCGGGCAAACAACTCGAGGATGGACGTACCCTGGCTGACTACAA 146206 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 ||| || || || || || | || || || ||||| Sbjct 146205 CATCCAGAAGGAGTCAACTCTTCACTTGGTGTTGCG 146170 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || || ||||| || || ||||| | ||||| || | | | Sbjct 146156 ATGCAGATTTTCGTGAAGACCTTGACCGGAAAGACCATCACTTTGGAAGTCGAGAGCTCG 146097 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | | || |||||||| |||||||||||||| || || || || Sbjct 146096 GACACCATTGACAACGTGAAGGCCAAAATTCAGGACAAGGAGGGTATCCCCCCAGACCAG 146037 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || |||||||| ||| | |||||| | | ||| | | || |||||| Sbjct 146036 CAGAGGTTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCAGGACCCTTGCAGACTACAAC 145977 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || ||| | || || || |||| |||| || ||| Sbjct 145976 ATTCAGAAGGAGTCGACCCTTCACTTGGTGCTGCGTCTGCGTGGTGGT 145929 >seq19 Length=713669 Score = 125 bits (138), Expect = 6e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| || || || ||||| | ||||| || || ||||||| || || || | Sbjct 623976 AAATATGCAGATCTTCGTCAAAACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAGAG 623917 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | |||| ||| | ||| | |||| || || |||||||||||||| ||||| || || Sbjct 623916 CTCCGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGGATTCCTCCGGA 623857 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 || || ||||| || || |||||||| ||| | ||||| ||| ||| || ||||||| Sbjct 623856 CCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGGACCCTCGCCGATTA 623797 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||| || || || || || | ||| | || | || | || |||||| Sbjct 623796 CAACATCCAGAAGGAGTCTACTCTCCATCTGGTCCTTCGTCTCCGTGGAGGT 623745 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22212 TGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGA 22271 || ||| ||||| || || || ||||| ||||||| || || | ||||| || || || Sbjct 628940 TGAAAATATGCAGATCTTCGTCAAAACCCTAACCGGCAAGACCATAACTCTCGAGGTCGA 628881 Query 22272 AACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACC 22331 | | |||| ||| | ||| | |||| || || || |||||||| || || || || Sbjct 628880 GAGCTCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCGCC 628821 Query 22332 CGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGA 22391 || || || ||||| || || || || || ||| | || || ||| ||| || |||| Sbjct 628820 GGACCAGCAGCGTCTGATCTTCGCTGGAAAGCAGCTCGAAGACGGCCGGACCCTCGCCGA 628761 Query 22392 TTACAACATTCAAAAAGAATCCAC 22415 ||||||||| || || || ||||| Sbjct 628760 TTACAACATCCAGAAGGAGTCCAC 628737 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || ||| |||| || || || || | | | Sbjct 623060 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTTGAGAGCTCG 623001 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || || || ||||||||||| |||||||| || || Sbjct 623000 GACACAATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGGATTCCACCGGACCAG 622941 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || |||||||| || ||||| |||||| |||||| | | |||||||| Sbjct 622940 CAGCGTCTGATCTTTGCCGGGAAGCAGTTGGAGGATGGTCGCACCCTTGCTGATTACAAT 622881 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || || ||| Sbjct 622880 ATCCAGAAGGAGTCTACC 622863 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| |||||||||| ||| | || || ||||| || | | | Sbjct 623744 ATGCAGATCTTCGTCAAAACCCTAACCGGTAAGACGATAACCCTAGAAGTCGAGAGCTCT 623685 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || || || || ||||| || || || || || || Sbjct 623684 GACACGATCGACAACGTCAAGGCCAAGATCCAGGATAAGGAAGGAATCCCGCCGGACCAG 623625 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || |||||||| ||||| ||||| |||||| || ||||||||||| Sbjct 623624 CAGAGGCTGATCTTCGCCGGCAAGCAGTTGGAGGACGGTCGCACCCTCGCCGATTACAAC 623565 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 623564 ATCCAGAAGGAGTCGAC 623548 >seq6 Length=1122688 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| |||| || || || | || | || || || || || Sbjct 399340 ATGCAGATCTTCGTGAAAACCCTAACGGGAAAGACCATAACCTTGGAGGTCGAGTCCTCC 399281 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || || ||||||||||||||||| || ||||| || Sbjct 399280 GACACTATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCCGACCAG 399221 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || ||||| || ||| | ||||| ||| ||| || |||| |||||| Sbjct 399220 CAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGGACCCTCGCCGACTACAAC 399161 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 || || || || ||||| | || || ||| Sbjct 399160 ATCCAGAAGGAGTCCACGCTTCACTTGGTT 399131 >seq420 Length=153407 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| |||| || || || | || || || || || || || Sbjct 119321 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTCGAGGTTGAGTCCTCC 119262 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | || || || || ||||||||||| || || || || || Sbjct 119261 GACACCATCGACAATGTGAAGACCAAGATCCAGGACAAGGAGGGAATCCCGCCGGACCAG 119202 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| ||| ||| || |||| |||||| Sbjct 119201 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGGACCCTCGCCGACTACAAC 119142 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 119141 ATCCAGAAGGAGTCGAC 119125 >seq1067 Length=57296 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || ||| |||| | || ||||| | | | Sbjct 37167 ATGCAGATCTTCGTGAAGACCTTGACTGGGAAGACGATCACCTTGGAGGTGGAGAGCTCG 37108 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || || ||| || | || |||||||| ||||||||||| || || || || || Sbjct 37107 GACACTGTCGACAATGTGAAGGCGAAAATTCAGGACAAGGAGGGCATCCCGCCAGACCAG 37048 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| || || ||||| |||||| | || | | ||||||||| Sbjct 37047 CAGAGGTTGATTTTTGCAGGGAAGCAGTTGGAGGATGGAAGGACTTTGGCTGATTACAAC 36988 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| || || |||||| Sbjct 36987 ATTCAGAAGGAGTCCACC 36970 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || | || || || || |||| ||||| ||||| | | | Sbjct 37395 ATGCAGATTTTTGTCAAGACGCTTACAGGAAAGACCATCACCCTTGAGGTGGAGAGCTCA 37336 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| ||| ||||||||||||||||| || || || || || Sbjct 37335 GACACGATTGATAACGTCAAGGCAAAGATTCAAGACAAGGAGGGAATCCCCCCTGACCAG 37276 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || || |||||| | || ||| | || | | ||||| ||| Sbjct 37275 CAGCGGCTGATTTTCGCTGGGAAACAGCTCGAAGATGGTAGGACTCTTGCGGATTATAAC 37216 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || ||||| ||| Sbjct 37215 ATCCAGAAGGAATCGACC 37198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419584793397175