Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq783 141 2e-28 seq143 100 6e-16 seq337 93.3 9e-14 seq303 93.3 9e-14 seq101 93.3 9e-14 seq1 93.3 9e-14 seq4909 91.5 3e-13 seq15 91.5 3e-13 seq642 87.8 4e-12 seq391 87.8 4e-12 seq55 86.0 1e-11 seq50 86.0 1e-11 >seq783 Length=84026 Score = 141 bits (156), Expect = 2e-28 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 218569 TCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCA 218628 |||||||| || | |||||||| ||||| || | |||||||||||| || Sbjct 13232 TCTATTCCTTCAATGATTGATGGCCTGAAGCCTGGTCAAAGGAAGATCCTCTTTTGTGCT 13173 Query 218629 TTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAA 218688 |||||| ||||| | || ||||| ||| | ||||||||||||||||||||||| || Sbjct 13172 TTCAAGAGGAACTTTGTCAAAGAAGCAAAGATTGCTCAGTTTTCTGGTTATGTATCTGAG 13113 Query 218689 ATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAG 218748 ||| | |||||| || |||||||||||||| ||| | || | || ||||| ||| Sbjct 13112 CATTCAGCCTACCACCATGGTGAGCAGAGTCTCGCCGGTACTATCATTGGAATGGCCCAG 13053 Query 218749 GACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGG 218801 || ||||| || || |||||||| || | || | || || || |||||||| Sbjct 13052 GATTATGTTGGTAGCAACAACATTAATCTTCTTATGCCAAATGGCCAGTTTGG 13000 >seq143 Length=298601 Score = 100 bits (110), Expect = 6e-16 Identities = 291/438 (66%), Gaps = 10/438 (2%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | ||| |||| || || || |||||||| | || || ||||| Sbjct 58477 TCGAAGAAGTTGGTCTTCCCCTGCAACGATATCAGCTCCATCCAATCAAACGGGTTCT-- 58420 Query 251623 GCATT--GTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGG-TCTGCCACAAACTCC 251679 ||| | |||| ||| || || || || ||| || | || || ||||| || Sbjct 58419 GCACTCCGTACACCTTCCCGCACCCTAGCGC-ACCCAGAAGCCGATCGGCGACAAATTCG 58361 Query 251680 AGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGA-CAAGGAATTGCCTCACA 251738 | ||||| | ||||||||| |||||| || | || ||| || || | || || || Sbjct 58360 ATGTACTGGCTCATCAGTTCCCGGTTCATCCCCACCA-ACGCGCACGGCAGCGCGTCGCA 58302 Query 251739 GATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGA 251798 | || ||| | ||| | | || || || || || |||| ||| | || Sbjct 58301 CACAAACTCCCTCTCGATCTCCACCGCGTCGCGGACGATCCCCTTGACCCGCTCCTCGCT 58242 Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAACTGTTGGTGCAGACCCTCGT 251857 |||||| ||| ||| ||||||||| || | ||| ||| | | |||| ||||||| Sbjct 58241 CAGCTTCTTCCTCAGTAGTGAGTACAGAAGGCACGCGAAATCGCAG-TGCAAGCCCTCGT 58183 Query 251858 CGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCC 251917 | || ||| ||||||||||| | || || ||||||| ||| || ||| | |||| Sbjct 58182 CTCGCGAGATCAACTCGTTGGAGAAGGTGAGTCCCGGCATCAACCCGCGCTTCTTTAGCC 58123 Query 251918 AGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAA 251977 ||||||| ||||| ||| ||| ||||| | | || ||||| || | | || | | Sbjct 58122 AGAAGATGGCGCAGAAGCTTCCGGAGAAGAAGATCCCTTCGACGCAGGCGAAGGCGATGA 58063 Query 251978 GGCGCTCAGCAAACGACT 251995 ||||||| || || |||| Sbjct 58062 GGCGCTCGGCGAAGGACT 58045 >seq337 Length=180865 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 50990 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 51049 Query 142563 CCCCAC 142568 |||||| Sbjct 51050 CCCCAC 51055 >seq303 Length=193259 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 12379 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 12320 Query 142563 CCCCAC 142568 |||||| Sbjct 12319 CCCCAC 12314 >seq101 Length=350468 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 1017 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 958 Query 142563 CCCCAC 142568 |||||| Sbjct 957 CCCCAC 952 >seq1 Length=1764766 Score = 93.3 bits (102), Expect = 9e-14 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559 || |||||| |||||||||||||||||||| || ||||||| || |||||||||||||| Sbjct 1505041 GACAGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTC 1504982 Query 142560 GAGCCCCAC 142568 ||||||||| Sbjct 1504981 GAGCCCCAC 1504973 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || |||||||||||||||| Sbjct 1023283 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAA 1023224 Query 142563 CCCCAC 142568 |||||| Sbjct 1023223 CCCCAC 1023218 >seq4909 Length=1373 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 519 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 578 Query 142564 CCCAC 142568 ||||| Sbjct 579 CCCAC 583 >seq15 Length=857006 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 193523 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 193582 Query 142564 CCCAC 142568 ||||| Sbjct 193583 CCCAC 193587 >seq642 Length=104802 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 80778 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 80837 Query 142563 CCCCAC 142568 |||||| Sbjct 80838 CCCCAC 80843 >seq391 Length=161468 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 34082 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 34141 Query 142563 CCCCAC 142568 |||||| Sbjct 34142 CCCCAC 34147 >seq55 Length=488294 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 354072 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 354013 Query 142564 CCCAC 142568 ||||| Sbjct 354012 CCCAC 354008 >seq50 Length=509894 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||| | Sbjct 275600 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAAC 275541 Query 142564 CCCAC 142568 ||||| Sbjct 275540 CCCAC 275536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027468129393795