Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq168 109 5e-19 seq19 105 6e-18 seq6 89.7 4e-13 seq1067 86.0 5e-12 >seq168 Length=274740 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | ||| || || || | || || || || || |||||||| || Sbjct 146155 ATTCCACCACGAAGACGCAACACCAAGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCA 146214 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||||| ||| || |||||||| || || |||| | | ||| ||||| || Sbjct 146215 GCCAGGGTACGTCCATCCTCGAGTTGTTTGCCCGCAAAGATCAACCTCTGCTGGTCTGGT 146274 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || ||||| |||||| || | | |||| |||||||| | ||| Sbjct 146275 GGGATGCCCTCCTTGTCTTGAATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTTTCA 146334 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || || ||||| ||||| || |||||||||||||| Sbjct 146335 ACCTCCAAGGTGATGGTCTTTCCGGTGAGAGTCTTAACAAAAATCTGCAT 146384 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || || || | || |||||||| ||||||||||| ||| Sbjct 146383 ATCCCACCACGGAGACGGAGCACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCG 146442 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||| || || || ||||| ||| |||| | | ||| ||||| || Sbjct 146443 GCGAGGGTTCGGCCATCCTCGAGCTGCTTACCGGCGAAGATCAATCTCTGCTGGTCTGGG 146502 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || ||||| ||||| ||| | | |||| |||||||| | ||| Sbjct 146503 GGGATGCCCTCCTTGTCCTGGATCTTGGCTTTGACATTGTCAATGGTGTCGGAGCTTTCT 146562 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | ||||| ||||| || || || ||||| || ||||| Sbjct 146563 ACCTCCAAGGTGATGGTTTTCCCGGTGAGGGTCTTGACAAATATTTGCAT 146612 Score = 86.0 bits (94), Expect = 5e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 || || || || || |||||| | || || | ||| ||||||||||||||||| || ||| Sbjct 145774 TCCTCGAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTG 145833 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347 || ||||||| || | | || | |||||| | | ||||| |||| ||| | Sbjct 145834 TCCTGAATCTTTGCCTTCACATTGTCGATGGTGTCCGAGCTCTCGACCTCCAAGGTGATG 145893 Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || ||||| || || || || ||||||||||| Sbjct 145894 GTCTTCCCGGTGAGGGTCTTAACGAAAATCTGCAT 145928 >seq19 Length=713669 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 || || || |||||||| || | || ||| || ||||| ||||| || ||| || Sbjct 623098 TCCTTCTGGATGTTGTAGTCCGCGAGGGTGCGACCGTCCTCAAGCTGTTTCCCGGCGAAG 623157 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 || || | ||| |||||||| ||||| ||||| ||||| ||||| ||| | | Sbjct 623158 ATAAGCCTCTGCTGGTCCGGGGGAATACCTTCCTTGTCCTGGATCTTGGCTTTCACGTTG 623217 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 || | |||||||| | ||||| || | ||| | ||| |||||||| || ||||| ||| Sbjct 623218 TCGATGGTGTCGGAGCTCTCGACCTCAAGGGTGATCGTCTTGCCGGTGAGGGTTTTCACA 623277 Query 114372 AAAATCTGCAT 114382 ||||||||||| Sbjct 623278 AAAATCTGCAT 623288 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | ||| | ||||| || || || |||||||||||| Sbjct 623743 ATACCTCCACGGAGACGAAGGACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCG 623802 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || || || || || || || ||| |||| |||||||| ||||||||| Sbjct 623803 GCGAGGGTCCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGA 623862 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| ||||| || | | || | |||||||| | ||| Sbjct 623863 GGAATCCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCG 623922 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || |||||||| || ||||| || || |||||||| Sbjct 623923 ACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTTTTGACGAAGATCTGCAT 623972 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||||||| | || || ||||| || || || ||| Sbjct 628737 GTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTCCGGCCGTCTTCGAGCTGCTTTCCA 628796 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| |||||||| |||||||| || || ||||| ||||| ||||| || Sbjct 628797 GCGAAGATCAGACGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTG 628856 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||||| | ||||| || | || | || |||||||| || ||| Sbjct 628857 ACGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGAGTTATGGTCTTGCCGGTTAGGGTT 628916 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 628917 TTGACGAAGATCTGCAT 628933 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 || || || |||||||| ||| | || || || || || || || || ||| || Sbjct 623326 TCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCGTCCTCCAGCTGCTTTCCGGCGAAG 623385 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 || |||||||| |||||||||||||| ||||| || || ||||| || | | Sbjct 623386 ATCAGACGCTGCTGGTCCGGAGGAATCCCTTCCTTATCCTGGATCTTGGCCTTGACGTTG 623445 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 || | |||||||| | || || |||| ||| | ||| || ||||| || ||||| ||| Sbjct 623446 TCGATGGTGTCGGAGCTCTCCACCTCCAGGGTGATCGTCTTTCCGGTTAGGGTTTTCACA 623505 Query 114372 AAAATCTGCAT 114382 || |||||||| Sbjct 623506 AATATCTGCAT 623516 >seq6 Length=1122688 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| || || | ||| || || || || |||||||| ||| | || || || || Sbjct 399131 AACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCGGCCGTCCTC 399190 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 || || || || ||| |||| || ||||| ||||| ||||| || || || ||||| Sbjct 399191 GAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCTTG 399250 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||||| || | | || | ||||||| ||| ||||| |||| ||| | || || Sbjct 399251 GATCTTGGCCTTGACATTGTCGATAGTGTCGGAGGACTCGACCTCCAAGGTTATGGTCTT 399310 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || || || ||||| || || |||||||||||| Sbjct 399311 TCCCGTTAGGGTTTTCACGAAGATCTGCATGGCT 399344 >seq1067 Length=57296 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || ||||| ||||| | ||| | | |||||| || ||||| ||| Sbjct 37199 GTCGATTCCTTCTGGATGTTATAATCCGCAAGAGTCCTACCATCTTCGAGCTGTTTCCCA 37258 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| | || || ||||| ||||| || || || || || ||||| ||||||| || Sbjct 37259 GCGAAAATCAGCCGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCTTGAATCTTTGCCTTG 37318 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||| | | || || || | ||| | || || || || || || Sbjct 37319 ACGTTATCAATCGTGTCTGAGCTCTCCACCTCAAGGGTGATGGTCTTTCCTGTAAGCGTC 37378 Query 114366 TTTACAAAAATCTGCAT 114382 || |||||||||||||| Sbjct 37379 TTGACAAAAATCTGCAT 37395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419991054737940