Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq143 349 7e-91 >seq143 Length=298601 Score = 349 bits (386), Expect = 7e-91 Identities = 626/908 (69%), Gaps = 10/908 (1%) Strand=Plus/Plus Query 42240 GAGCCGCTCCTGGCGCCGAGCAACTCCAGGTTCACCCTGGACGTGATCGAGCACCAGGAC 42299 ||||| || || || |||| | | | ||||| | || | |||| || ||| ||| Sbjct 57600 GAGCCCCTTCTCGCCCCGAACCCCGACCGGTTCTGCATGTTCCCGATCCAGTACCCGGAG 57659 Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || ||| ||||||||||||||| | ||||| Sbjct 57660 ATCTGGGAGATGTACAAGAAGGCCGAGGCCTCGTTTTGGACCGCCGAGGAGGTCGACCTC 57719 Query 42360 GCCAAGGACA-CGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAA 42418 || |||||| | ||| | | | || | || | |||| ||| ||| ||| | Sbjct 57720 TCCCAGGACATCCGCCAGTTCGAAGCC-CTCACCCCCGACGAGAAGCACTTCATCACCCA 57778 Query 42419 CATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTT 42478 | | || ||||||||||||||||| |||||||| ||| ||||| || ||| |||| Sbjct 57779 CGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTAGAGAATCTCGCCGGTGGGTT 57838 Query 42479 CATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGA 42538 |||||| ||||| ||| | |||||||| |||||||||||||||||| ||||| || Sbjct 57839 CATGAAGGAGGTCCAGGTCGCGGAGGCGCGTGCCTTCTACGGCTTCCAGATCGCCATCGA 57898 Query 42539 GAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGA 42598 |||| | ||||| || ||||| | || ||| | || |||||| |||| ||| ||| Sbjct 57899 GAACATCCACTCCGAAATGTACAGCCTCCTCCTCGAGACCTACATCAAGGATTCCGCCGA 57958 Query 42599 GCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTG 42658 | | | | || ||| ||||| || || | || ||| || ||||||||| | || Sbjct 57959 GAAGAGCCGCCTCTTCCGCGCCATCGACACTGTCCCTTGCGTCGCGAAGAAGGCCCAGTG 58018 Query 42659 GGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTAC 42718 ||| ||| ||||||||| | |||| | |||| |||| | || | ||||| | Sbjct 58019 GGCCCTCCGCTGGATCGACGGCTCCGA---GTCCTTCGCCGAGCGCCTCATCGCCTTCGC 58075 Query 42719 CGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA 42778 | |||||| || ||||||||||| || |||| | ||||||||||||| ||| || Sbjct 58076 CTGCGTCGAAGGGATCTTCTTCTCCGGAAGCTTCTGCGCCATCTTCTGGCTAAAGAAGCG 58135 Query 42779 GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCA 42838 | || |||||| |||||||||||||| ||||| | ||| | |||||||| |||| Sbjct 58136 CGGGTTGATGCCGGGACTCACCTTCTCCAACGAGTTGATCTCGCGAGACGAGGGCTTGCA 58195 Query 42839 TAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCG 42898 | || || || ||||| |||| ||| | || ||| | |||| ||||||| Sbjct 58196 CTGCGATTTCGCGTGCCTTCTGTACTC---ACTACTGAGGAAGAAGCTGAGCGAGGAGCG 58252 Query 42899 GGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCT 42958 |||| || ||| || || || ||||||||||||| |||||| | | |||| Sbjct 58253 GGTCAAGGGGATCGTCCGCGACGCGGTGGAGATCGAGAGGGAGTTTGTGTGCGACGCGCT 58312 Query 42959 GCCCGTG-TCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCG 43017 | ||||| | |||| || ||||||| || || ||| || |||||||| | | |||| Sbjct 58313 G-CCGTGCGCGTTGGTGGGGATGAACCGGGAACTGATGAGCCAGTACATCGAATTTGTCG 58371 Query 43018 CCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCG 43077 |||| | || ||| | | | || | | | ||| || | ||| || | Sbjct 58372 CCGATCGGCTTCTGGGTGCGCTAGGGTGCGGGAAGGTGTACGGAGTGCAGAACCCGTTTG 58431 Query 43078 ACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCG 43137 | | |||||| || |||||| |||| ||||||||||| ||||||||| | |||| | Sbjct 58432 ATTGGATGGAGCTGATATCGTTGCAGGGGAAGACCAACTTCTTCGAGAAGAGGGTCGGTG 58491 Query 43138 ACTACCAG 43145 | |||||| Sbjct 58492 AGTACCAG 58499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944008740301200