Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq19 98.7 8e-16 seq343 93.3 3e-14 seq1067 87.8 1e-12 seq420 87.8 1e-12 seq6 87.8 1e-12 seq168 82.4 6e-11 >seq19 Length=713669 Score = 98.7 bits (108), Expect = 8e-16 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || || |||||||||||||| |||||||||||||| |||||||| || || Sbjct 623290 CCTCCACGGAGACGGAGCACCAGATGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGCG 623349 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 | ||| |||| |||| ||||| ||||| || ||||| |||||||| ||| Sbjct 623350 AGGGTTCGGCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCC 623403 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 |||| || |||||||| ||||| ||||||||| ||||||||||| || | || Sbjct 623527 AGCCTGAGTACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGA 623586 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| ||||| ||||||||||| || ||||| | |||||| ||| ||| | | || Sbjct 623587 CCGTCCTCCAACTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGCGGGATTCCTTCC 623646 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGCATTCGACCGT 34088 || ||| || || ||| | | | | |||| || | ||| ||| | || Sbjct 623647 TTATCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCAG-AGCTCTCGACTTCTAGGGT 623705 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| || || |||||||| ||||| || ||||| ||||| Sbjct 623706 TATCGTCTTACCGGTTAGGGTTTTGACGAAGATCTGCAT 623744 >seq343 Length=177656 Score = 93.3 bits (102), Expect = 3e-14 Identities = 91/115 (79%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || |||| || ||||||||||| || ||||||||||||||||||||| | | Sbjct 100709 CCTCCCCTAAGCCTCAAAACCAGATGAAGAGTTGACTCCTTCTGAATGTTGTAATCCG-C 100767 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 || || | | | || ||||||||||| || ||||| |||| | |||||||||| Sbjct 100768 AAGAGTCCTCCCATCTTCCAATTGCTTCCCAGCAAAAATCAATCTCTGCTGATCC 100822 >seq1067 Length=57296 Score = 87.8 bits (96), Expect = 1e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || || ||||| ||| ||||||||||||||||||||| ||||| ||| Sbjct 36950 AGACGGAGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCCAA-AGTCCT 37008 Query 33970 T-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | | || ||||| ||||| || ||||| |||| | |||||| || ||| | || ||| Sbjct 37009 TCCATCCTCCAACTGCTTCCCTGCAAAAATCAACCTCTGCTGGTCTGGCGGGATGCCCTC 37068 Query 34029 TTTGTCCATAATTTT 34043 |||||| |||||| Sbjct 37069 CTTGTCCTGAATTTT 37083 >seq420 Length=153407 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || || |||||||| || ||||| ||||||||| |||||||| || || Sbjct 119095 CCTCCCCTAAGGCGGAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 119154 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| || | ||||||||||| || || ||||||||||| ||| ||| Sbjct 119155 AGGGTCCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 119214 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTCG 34077 | | ||| |||||| || || ||| || | || | | || | || || Sbjct 119215 ATTCCCTCCTTGTCCTGGATCTTGGTCTTCACATTG---TCGATGGTGTCGGAGGACTCA 119271 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| ||||| || || || ||||| |||||||| ||||| ||||| Sbjct 119272 ACCTCGAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 119321 >seq6 Length=1122688 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 |||||||| || || || |||| ||||||||| ||||||||| |||||||| || || Sbjct 399114 CCTCCTCTGAGGCGGAGAACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCG 399173 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| || | ||||| ||||| || |||||||||||||| || || Sbjct 399174 AGGGTCCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGG 399233 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTCG 34077 | | ||| ||||| || || ||| || | || | | | || | || ||| Sbjct 399234 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTG---TCGATAGTGTCGGAGGACTCG 399290 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | ||||| || ||||| ||||| |||||||| ||||| ||||| Sbjct 399291 ACCTCCAAGGTTATGGTCTTTCCCGTTAGGGTTTTCACGAAGATCTGCAT 399340 >seq168 Length=274740 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || || ||||||| ||| || ||| ||||||||| |||||||| || || Sbjct 146614 CCTCCACGAAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 146673 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | |||| |||| || | |||||||||||||| || || | |||||| || || Sbjct 146674 AGGGTTCGCCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGGTCTGGGGGG 146733 Query 34021 ACGCTCTCTTTGTCCATAATTTT 34043 | || ||| |||||| ||||| Sbjct 146734 ATGCCCTCCTTGTCCTGGATTTT 146756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396926926651990