Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq19 154 3e-32 seq168 116 9e-21 seq207 114 3e-20 seq420 111 4e-19 seq6 105 2e-17 seq1067 89.7 1e-12 >seq19 Length=713669 Score = 154 bits (170), Expect = 3e-32 Identities = 173/230 (75%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| || ||||| ||||| | ||| || || ||||| || || |||||| Sbjct 623518 CCACCGCGGAGCCTGAGTACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 623577 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || || || || || ||||||||||| | ||| || ||| Sbjct 623578 AGGGTGCGACCGTCCTCCAACTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGCGGG 623637 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 |||||||| ||||||||||| || || || ||||| || || | || |||| || Sbjct 623638 ATTCCTTCCTTATCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCAGAGCTC---TCG 623694 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || |||||||| ||||| || || |||||||| |||||||| Sbjct 623695 ACTTCTAGGGTTATCGTCTTACCGGTTAGGGTTTTGACGAAGATCTGCAT 623744 Score = 145 bits (160), Expect = 2e-29 Identities = 171/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | || || ||||||| ||||| || || ||||| || ||||||||| Sbjct 623290 CCTCCACGGAGACGGAGCACCAGATGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGCG 623349 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | || ||||| ||||||||||||||||| || || Sbjct 623350 AGGGTTCGGCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGA 623409 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || ||||| ||||||||||| || || || ||||| || || | || |||| || Sbjct 623410 ATCCCTTCCTTATCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTC---TCC 623466 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||||||||| ||||| || || || || ||||||||||| Sbjct 623467 ACCTCCAGGGTGATCGTCTTTCCGGTTAGGGTTTTCACAAATATCTGCAT 623516 Score = 136 bits (150), Expect = 9e-27 Identities = 172/234 (74%), Gaps = 12/234 (5%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| ||||| | || || ||||| | ||||| || || ||||| || ||||| || Sbjct 623061 TCCACCACGGAGACGGAGCACCAGATGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCCGC 623120 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| ||||| ||||| || | ||||| || |||||||| || | ||| || || || Sbjct 623121 GAGGGTGCGACCGTCCTCAAGCTGTTTCCCGGCGAAGATAAGCCTCTGCTGG---TCCGG 623177 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGA 288419 | || ||||| || |||||||| || ||||||||||| || || | || |||| Sbjct 623178 GGGAATACCTTCCTTGTCCTGGATCTTGGCTTTCACGTTGTCGATGGTGTCGGAGCTC-- 623235 Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||||||||| ||||| || || || || || |||||||| Sbjct 623236 -TCGACCTCAAGGGTGATCGTCTTGCCGGTGAGGGTTTTCACAAAAATCTGCAT 623288 Score = 132 bits (146), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| || | || || || || | ||| || || ||||| || || |||||| Sbjct 628707 CCGCCGCGAAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGCG 628766 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || |||||||| | || ||||| ||||||||||||||||| || ||| Sbjct 628767 AGGGTCCGGCCGTCTTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGCGGG 628826 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 |||||||| || |||||||| || || || ||||| || || | || |||| || Sbjct 628827 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTC---TCG 628883 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || || ||||| ||||| || || |||||||| |||||||| Sbjct 628884 ACCTCGAGAGTTATGGTCTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 628933 Score = 123 bits (136), Expect = 6e-23 Identities = 145/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| || || || || ||||| || || || || || || || || ||| Sbjct 622870 TCCTTCTGGATATTGTAATCAGCAAGGGTGCGACCATCCTCCAACTGCTTCCCGGCAAAG 622929 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || ||| || || || || |||||||| ||||| |||||||| Sbjct 622930 ATCAGACGCTGCTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTG 622989 Query 288403 TCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | || |||| || || ||||| ||||||||||| || || || |||||| Sbjct 622990 TCGATTGTGTCCGAGCTC---TCAACCTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTG 623046 Query 288460 ACGAATATCTGCATT 288474 || || ||||||||| Sbjct 623047 ACAAAGATCTGCATT 623061 Score = 114 bits (126), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | ||| || ||||| | || || || ||||| || || |||||| Sbjct 623746 CCTCCACGGAGACGAAGGACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGCG 623805 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | || || || ||||||||||||||||| || || Sbjct 623806 AGGGTCCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGA 623865 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || || || || || ||||| || || || ||||| || || | || |||| || Sbjct 623866 ATCCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTC---TCG 623922 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| ||||| || || |||||||| |||||||| Sbjct 623923 ACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTTTTGACGAAGATCTGCAT 623972 >seq168 Length=274740 Score = 116 bits (128), Expect = 9e-21 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | |||| ||| |||||| || || || ||||||||| Sbjct 146386 CCACCACGGAGACGGAGCACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGGCG 146445 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || || || || || || | || || || |||||||||| | ||| || ||| Sbjct 146446 AGGGTTCGGCCATCCTCGAGCTGCTTACCGGCGAAGATCAATCTCTGCTG---GTCTGGG 146502 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || || |||||||| || ||||| || || || || | ||| |||| Sbjct 146503 GGGATGCCCTCCTTGTCCTGGATCTTGGCTTTGACATTGTCAATGGTGTCGGAGCTTTCT 146562 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || | ||||| || |||||||| || |||||||| ||||| |||||| Sbjct 146563 ACCTCCAAGGTGATGGTTTTCCCGGTGAGGGTCTTGACAAATATTTGCATT 146613 Score = 109 bits (120), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | || | ||| || || ||||| || ||||| ||| Sbjct 146842 CCACCACGGAGGCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCG 146901 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | ||||| || ||||||||||| | ||| || |||| Sbjct 146902 AGGGTTCGGCCGTCCTCAAGCTGTTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGTGGG 146961 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || || || || || || || || ||||| || || || || | || ||| ||| Sbjct 146962 ATACCCTCCTTGTCTTGAATCTTAGCTTTGACATTATCGATGGTGTCAGAGCT---TTCC 147018 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| ||||| ||||| || ||||| |||||||| Sbjct 147019 ACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTTTTCACGAAGATCTGCAT 147068 Score = 105 bits (116), Expect = 2e-17 Identities = 143/197 (73%), Gaps = 12/197 (6%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||||||| || || ||||| || | || || || || ||| Sbjct 146650 TCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGCCCGTCCTCGAGCTGCTTGCCGGCAAAG 146709 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || | ||| || ||| ||||| || || || ||||||||||| || || ||| Sbjct 146710 ATGAGTCTCTGCTG---GTCTGGGGGGATGCCCTCCTTGTCCTGGATTTTGGCCTTGACG 146766 Query 288400 TTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || | || |||| || || ||||| ||||| || |||||||| || ||| Sbjct 146767 TTGTCAATGGTGTCGGAGCTC---TCAACCTCGAGGGTGATGGTTTTCCCGGTGAGGGTC 146823 Query 288457 TTGACGAATATCTGCAT 288473 || ||||| || ||||| Sbjct 146824 TTAACGAAGATTTGCAT 146840 Score = 93.3 bits (102), Expect = 1e-13 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| ||||| | ||| || || || | || || || |||||||| ||||| || Sbjct 145701 TCCACCACGGAGGCGAAGGACAAGGTGGAGGGTAGACTCCTTCTGGATATTGTAGTCCGC 145760 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || | ||||| || | || || || ||||| ||||| | ||| || || Sbjct 145761 CAGGGTCCTCCCGTCCTCGAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCCGGAGG 145820 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTC 288422 || || || || ||||| || || || ||||| || || || | || |||| || Sbjct 145821 AATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTGTCGATGGTGTCCGAGCTC---TC 145877 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||||| ||||||||||| || ||||| ||||| |||||||| Sbjct 145878 GACCTCCAAGGTGATGGTCTTCCCGGTGAGGGTCTTAACGAAAATCTGCAT 145928 >seq207 Length=245090 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||||||| || || ||||| || | || ||||| || ||| Sbjct 172603 TCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCGTCCTCCAGCTGCTTTCCGGCAAAG 172544 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || || || || || ||||||||||| ||||| ||||| || Sbjct 172543 ATCAGACGCTGCTGGTCCGGCGGAATCCCCTCCTTATCCTGGATCTTCGCCTTCACATTG 172484 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || || || || || |||||||| || || || || ||| Sbjct 172483 TCGATGGTGTCCGAGGACTCGACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACG 172424 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 172423 AAGATCTGCAT 172413 >seq420 Length=153407 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||||||| || || ||||| || | || || || |||||| Sbjct 119131 TCCTTCTGGATGTTGTAGTCGGCGAGGGTCCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 119190 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || ||||| || |||||||| || || |||||||| || | ||||| || Sbjct 119191 ATGAGGCGCTGCTGGTCCGGCGGGATTCCCTCCTTGTCCTGGATCTTGGTCTTCACATTG 119250 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || || || ||||| || || |||||||| || || || || ||| Sbjct 119251 TCGATGGTGTCGGAGGACTCAACCTCGAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACG 119310 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 119311 AAGATCTGCAT 119321 >seq6 Length=1122688 Score = 105 bits (116), Expect = 2e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330 |||| |||| || || ||||| || ||||||||||| || || ||||| || | || Sbjct 399138 TGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCGGCCGTCCTCGAGCTGC 399197 Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 ||||| ||||||||||| ||||| || ||||| || || || || ||||| || Sbjct 399198 TTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCTTGGATCTTG 399257 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || || || || |||| ||| || || || || | || || ||||| || || Sbjct 399258 GCCTTGACATTGTCGATAGTGTCGGAGGACTCGACCTCCAAGGTTATGGTCTTTCCCGTT 399317 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| |||||||| Sbjct 399318 AGGGTTTTCACGAAGATCTGCAT 399340 >seq1067 Length=57296 Score = 89.7 bits (98), Expect = 1e-12 Identities = 161/233 (69%), Gaps = 12/233 (5%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || || |||| ||| || || || || || || || || Sbjct 36941 CCACCACGAAGACGGAGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCC 37000 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 | || | ||| || || || || || ||||| || |||| | ||| || ||||| Sbjct 37001 AAAGTCCTTCCATCCTCCAACTGCTTCCCTGCAAAAATCAACCTCTGCTGG---TCTGGC 37057 Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 ||| || || || ||||| |||||||| ||||| || || | || || |||| Sbjct 37058 GGGATGCCCTCCTTGTCCTGAATTTTCGCCTTCACATTGTCGACAGTGTCCGAGCTC--- 37114 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || | |||||||||||||| |||| ||||| ||||| |||||||| Sbjct 37115 TCCACCTCCAAGGTGATCGTCTTCCCAGTCAAGGTCTTCACGAAGATCTGCAT 37167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179231274555610