Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq143 156 9e-33 >seq143 Length=298601 Score = 156 bits (172), Expect = 9e-33 Identities = 310/454 (68%), Gaps = 4/454 (1%) Strand=Plus/Plus Query 243286 TCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGT 243345 || || || ||||| ||| |||||| | ||||| ||||| || | || ||||| || Sbjct 58047 TCCTTCGCCGAGCGCCTCATCGCCTTCGCCTGCGTCGAAGGGATCTTCTTCTCCGGAAGC 58106 Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 243405 |||||||||||||| ||||| ||| || ||||||| || ||| | || ||| Sbjct 58107 TTCTGCGCCATCTTCTGGCTAAAGAAGCGCGGGTTGATGCCGGGACTCACCTTCTCCAAC 58166 Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCAAA 243464 ||||| ||| || ||||||||| | ||| | |||| ||| ||| |||| ||| Sbjct 58167 GAGTTGATCTCGCGAGACGAGGGCTTGCACTGCGATTTCGCGTGC-CTTCTGTACTCACT 58225 Query 243465 GCTCCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAA 243524 || ||| ||||| || |||||| ||| || || || || || | Sbjct 58226 ACTGAGGAAGAAGCTGAGCGAGGAGCGGGTCAAGGGGATCGTCCGCGACGCGGTGGAGAT 58285 Query 243525 CGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACT 243584 ||| | ||| || | |||||||| | || ||| | | | || |||||| ||||| Sbjct 58286 CGAGAGGGAGTTTGTGTGCGACGCGCTGCCGTGCGCGTTGGTGGGGATGAACCGGGAACT 58345 Query 243585 CATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAA 243644 ||| | |||||||||||||| || ||||| || || | ||||| || | | ||| Sbjct 58346 GATGAGCCAGTACATCGAATTTGTCGCCGATCGGCTTCTGGGTGCGCTAGGGTGCGGGAA 58405 Query 243645 AGTGTAC-AACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAA 243703 |||||| | | | ||||||| |||| | |||||||| || ||| | || ||||| | Sbjct 58406 GGTGTACGGAGTGC-AGAACCCGTTTGATTGGATGGAGCTGATATCGTTGCAGGGGAAGA 58464 Query 243704 CTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 | ||||||||||| ||| | ||| |||| || || Sbjct 58465 CCAACTTCTTCGAGAAGAGGGTCGGTGAGTACCA 58498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102484412453250