Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq168 131 2e-25 seq6 107 2e-18 seq19 105 7e-18 seq420 104 3e-17 seq1067 100 3e-16 >seq168 Length=274740 Score = 131 bits (144), Expect = 2e-25 Identities = 170/231 (74%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | | ||| | ||||||||| | ||| |||||| || || ||||| || || Sbjct 146614 CCTCCACGAAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 146673 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || ||| |||| || |||||||| || || || ||||||| ||||||||| | || Sbjct 146674 AGGGTTCGCCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGGTCTGGGGGG 146733 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCG-TGTCG---CTCGATTC 42157 | || |||||||||| |||||| |||| ||| | || | ||||| ||| || Sbjct 146734 ATGCCCTCCTTGTCCTGGATTTTGGCCTTGA-CGTTGTCAATGGTGTCGGAGCTC---TC 146789 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||| ||||||||||| || || || ||||| || ||||||||||| Sbjct 146790 AACCTCGAGGGTGATGGTTTTCCCGGTGAGGGTCTTAACGAAGATTTGCAT 146840 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| || | ||| || || ||||| ||||| || || || || || | Sbjct 146397 ACGGAGCACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGGCGAGGGTTCGGCC 146456 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || ||||||||||| ||||| || | || ||||||||| | || | || |||||| Sbjct 146457 ATCCTCGAGCTGCTTACCGGCGAAGATCAATCTCTGCTGGTCTGGGGGGATGCCCTCCTT 146516 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 |||| ||| || ||||| | | | |||||| ||| || || | ||||| Sbjct 146517 GTCCTGGATCTTGGCTTTGACATTGTCAATGGTGTCGGAGCTTTCTACCTCCAAGGTGAT 146576 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 |||||| || || || ||||| ||||| ||||||||| Sbjct 146577 GGTTTTCCCGGTGAGGGTCTTGACAAATATTTGCATT 146613 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||||||||| || | || |||||| || || ||||| |||||||| || || | Sbjct 146169 ACGCAACACCAAGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGTCC 146228 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || || || || || || || || | | ||||||||| | ||| | || |||||| Sbjct 146229 ATCCTCGAGTTGTTTGCCCGCAAAGATCAACCTCTGCTGGTCTGGTGGGATGCCCTCCTT 146288 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 || | ||| | || | |||| | | | |||||| ||| || || | |||| Sbjct 146289 GT-CTTGAATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTTTCAACCTCCAAGGTGA 146347 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || || || || ||||| ||||| || ||||| Sbjct 146348 TGGTCTTTCCGGTGAGAGTCTTAACAAAAATCTGCAT 146384 >seq6 Length=1122688 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| | || | ||||| || | ||| |||||| || || ||||| || || Sbjct 399114 CCTCCTCTGAGGCGGAGAACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCG 399173 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || ||||| |||| || |||||||| || ||||| || || ||||||||||||| || Sbjct 399174 AGGGTCCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGG 399233 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | ||||||||| ||| || |||| | | | |||||| || || || Sbjct 399234 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATAGTGTCGGAGGACTCGACC 399293 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | || ||||| || |||||||| || || || ||||| ||||| Sbjct 399294 TCCAAGGTTATGGTCTTTCCCGTTAGGGTTTTCACGAAGATCTGCAT 399340 >seq19 Length=713669 Score = 105 bits (116), Expect = 7e-18 Identities = 144/197 (73%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || |||||||||||||| || || || | || || | |||||| || || || Sbjct 622869 CTCCTTCTGGATATTGTAATCAGCAAGGGTGCGACCATCCTCCAACTGCTTCCCGGCAAA 622928 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | ||| | | |||||||||| ||| || || | ||| Sbjct 622929 GATCAGACGCTGCTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGT 622987 Query 42137 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | ||||| |||| || || |||| ||||| || |||||||| || |||| Sbjct 622988 TGTCGATTGTGTCCGAGCTC---TCAACCTCGAGGGTGATCGTCTTGCCCGTGAGGGTCT 623044 Query 42193 TTACAAAGATTTGCATT 42209 | |||||||| |||||| Sbjct 623045 TGACAAAGATCTGCATT 623061 Score = 105 bits (116), Expect = 7e-18 Identities = 145/199 (73%), Gaps = 8/199 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || |||||||| || || ||||| |||| || |||||||| |||||||| Sbjct 628742 CTCCTTCTGGATGTTGTAATCGGCGAGGGTCCGGCCGTCTTCGAGCTGCTTTCCAGCGAA 628801 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | | ||||||||| ||| || |||| ||| Sbjct 628802 GATCAGACGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 628860 Query 42137 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | ||||| |||| || || |||| || ||||| ||||| ||||| || | Sbjct 628861 TGTCGATGGTGTCGGAGCTC---TCGACCTCGAGAGTTATGGTCTTGCCGGTTAGGGTTT 628917 Query 42193 TTACAAAGATTTGCATTTT 42211 | || ||||| ||||| || Sbjct 628918 TGACGAAGATCTGCATATT 628936 Score = 102 bits (112), Expect = 9e-17 Identities = 166/235 (71%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | | ||| | |||| ||| | || |||||| || || |||||||| || Sbjct 623745 ACCTCCACGGAGACGAAGGACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGC 623804 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || ||||| |||| || |||||||| || ||||| || || ||||||||||| | || Sbjct 623805 GAGGGTCCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGAGG 623864 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATT 42156 | | ||||||||| ||| || |||| ||| | | | ||||| |||| | Sbjct 623865 AATCCCCTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTC---T 623920 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 | || |||| |||||||| ||||| || || || || || ||||| ||||| || Sbjct 623921 CGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTTTTGACGAAGATCTGCATATT 623975 Score = 100 bits (110), Expect = 3e-16 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | | ||| | ||||| ||| | ||||||||||| || || ||||| || || Sbjct 623290 CCTCCACGGAGACGGAGCACCAGATGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGCG 623349 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || |||| || |||||||| || ||||| || || ||||||||||| | || Sbjct 623350 AGGGTTCGGCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGA 623409 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 42157 | | ||||| ||| ||| || |||| ||| | | | ||||| |||| || Sbjct 623410 ATCCCTTCCTTATCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTC---TC 623465 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || | ||||| || || || ||||| || || ||||| || ||||| Sbjct 623466 CACCTCCAGGGTGATCGTCTTTCCGGTTAGGGTTTTCACAAATATCTGCAT 623516 Score = 89.7 bits (98), Expect = 6e-13 Identities = 154/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||||| ||| | ||||||||||| || || ||||| || || || || || | Sbjct 623073 ACGGAGCACCAGATGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCCGCGAGGGTGCGACC 623132 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || ||||| || || ||||| || || | ||||||||| | || | | ||||| Sbjct 623133 GTCCTCAAGCTGTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGGGGGAATACCTTCCTT 623192 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCG 42168 |||| ||| || ||| | ||| | | | ||||| |||| || || || | | Sbjct 623193 GTCCTGGATCTTGGCTTTCA-CGTTGTCGATGGTGTCGGAGCTC---TCGACCTCAAGGG 623248 Query 42169 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || ||||| || || || || ||||| || ||||| Sbjct 623249 TGATCGTCTTGCCGGTGAGGGTTTTCACAAAAATCTGCAT 623288 >seq420 Length=153407 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || ||||| |||| || |||||||| || ||||| Sbjct 119130 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 119189 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | | |||||||||| ||| || || | | Sbjct 119190 GATGAGGCGCTGCTGGTCCGGCGGGATTCCCTCCTTGTCCTGGATCTTGGTCTTCACATT 119249 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||| || || || |||| || ||||| || |||||||| || || || Sbjct 119250 GTCGATGGTGTCGGAGGACTCAACCTCGAGGGTTATGGTCTTCCCCGTTAGGGTTTTCAC 119309 Query 42197 AAAGATTTGCAT 42208 ||||| ||||| Sbjct 119310 GAAGATCTGCAT 119321 >seq1067 Length=57296 Score = 100 bits (110), Expect = 3e-16 Identities = 142/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || || ||||| || ||||||| | || || ||||| || |||||||| Sbjct 37205 TCCTTCTGGATGTTATAATCCGCAAGAGTCCTACCATCTTCGAGCTGTTTCCCAGCGAAA 37264 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 || || ||||||||||| | || | | |||||||| | ||| | |||| |||| | Sbjct 37265 ATCAGCCGCTGCTGGTCAGGGGGGATTCCCTCCTTGT-CTTGAATCTTTGCCTTGACGTT 37323 Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | |||||| |||| ||||| || | |||||||| || || || |||||||| Sbjct 37324 ATCAATCGTGTCTGAGCTC---TCCACCTCAAGGGTGATGGTCTTTCCTGTAAGCGTCTT 37380 Query 42194 TACAAAGATTTGCATT 42209 ||||| || |||||| Sbjct 37381 GACAAAAATCTGCATT 37396 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||||||||| ||||| || ||||| |||| | || || |||||||| |||||||| Sbjct 37432 CTCCTTTTGAATGTTGTAGTCGGCCAGGGTCCTTCCATCCTCAAGCTGCTTCCCAGCGAA 37491 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124 || || | ||||||||| | ||| | || |||||||||| ||| || Sbjct 37492 GATAAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGGATCTT 37539 Score = 86.0 bits (94), Expect = 7e-12 Identities = 139/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||||||||||| ||||| | || || | |||||| || || || Sbjct 36976 CTCCTTCTGAATGTTGTAATCAGCCAAAGTCCTTCCATCCTCCAACTGCTTCCCTGCAAA 37035 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || | | ||||||||| | || | || |||||||||| ||| |||| | || | Sbjct 37036 AATCAACCTCTGCTGGTCTGGCGGGATGCCCTCCTTGTCC-TGAATTTTCGCCTTCACAT 37094 Query 42136 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | || ||||| |||| ||||| || | ||||| || || || || | |||| Sbjct 37095 TGTCGACAGTGTCCGAGCTC---TCCACCTCCAAGGTGATCGTCTTCCCAGTCAAGGTCT 37151 Query 42193 TTACAAAGATTTGCAT 42208 | || ||||| ||||| Sbjct 37152 TCACGAAGATCTGCAT 37167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543022709470800