Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq19 132 5e-26 seq420 116 4e-21 seq168 111 2e-19 seq6 109 5e-19 seq207 104 2e-17 seq1067 96.9 3e-15 >seq19 Length=713669 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | || || || ||||| | |||||| || || || ||||||||||| || Sbjct 623517 ACCACCGCGGAGCCTGAGTACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGC 623576 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || |||||| |||| || | |||||||||||| | || |||| ||||||||| || || Sbjct 623577 GAGGGTGCGACCGTCCTCCAACTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGCGG 623636 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||||||| || || || || || ||| || || | || ||| | || || Sbjct 623637 GATTCCTTCCTTATCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCAGAGCTCTCGAC 623696 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| ||||| ||||| | ||||| ||||| || ||||| Sbjct 623697 TTCTAGGGTTATCGTCTTACCGGTTAGGGTTTTGACGAAGATCTGCAT 623744 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | || || || || || ||||||||||| |||| ||| || |||| Sbjct 623760 AAGGACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGCGAGGGTCCGGCCGTC 623819 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || |||||||||||||| | || || ||||||||||| |||||||| || || || || Sbjct 623820 CTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGAATCCCCTCCTTGTC 623879 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || || ||| || || | || || | || || || | ||| | ||| Sbjct 623880 TTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGAGTGATGGT 623939 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||||||| | ||||| ||||| || ||||| || Sbjct 623940 CTTGCCGGTGAGGGTTTTGACGAAGATCTGCATATT 623975 Score = 113 bits (124), Expect = 5e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||| | | || || || || | || || || || || ||||||||||| ||| Sbjct 628707 CCGCCGCGAAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGCG 628766 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||| || ||||||| |||||||| || || | || || ||||||||||| || || Sbjct 628767 AGGGTCCGGCCGTCTTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGCGGG 628826 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 |||||||| || || || || || ||| || || | || || | || || Sbjct 628827 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACC 628886 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | ||||| |||||||||||| | ||||| ||||| || ||||| || Sbjct 628887 TCGAGAGTTATGGTCTTGCCGGTTAGGGTTTTGACGAAGATCTGCATATT 628936 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||||| || || || || |||||||| || |||| ||| || |||| Sbjct 623305 AGCACCAGATGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCGTCC 623364 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| ||||| | || || ||||||||||| |||||||| ||||| || || Sbjct 623365 TCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGAATCCCTTCCTTATCC 623424 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || || | || || | ||||| || | || | ||| Sbjct 623425 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCCACCTCCAGGGTGATCGTC 623484 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| | ||||| || || || ||||| Sbjct 623485 TTTCCGGTTAGGGTTTTCACAAATATCTGCAT 623516 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || || || || |||||||| || |||| |||||| |||| Sbjct 623077 AGCACCAGATGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCCGCGAGGGTGCGACCGTCC 623136 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 |||||||| || ||||| | || |||| ||||||||| || ||||| ||||| || || Sbjct 623137 TCAAGCTGTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGGGGGAATACCTTCCTTGTCC 623196 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||||| || || | || || | || || || | || | || Sbjct 623197 TGGATCTTG-GCTTTCACGTTGTCGATGGTGTCGGAGCTCTCGACCTCAAGGGTGATCGT 623255 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||||| | ||||| || ||||| ||||| Sbjct 623256 CTTGCCGGTGAGGGTTTTCACAAAAATCTGCAT 623288 >seq420 Length=153407 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | |||||| || || || |||||||| || |||| ||| || |||| Sbjct 119110 AGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCGGCCGTCC 119169 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||||||||| | ||||| ||||||||||| || || ||||| || || || Sbjct 119170 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATTCCCTCCTTGTCC 119229 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || || || || || || | |||| |||| Sbjct 119230 TGGATCTTGGTCTTCACATTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTTATGGTC 119289 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | ||||| ||||| || ||||| Sbjct 119290 TTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 119321 >seq168 Length=274740 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||||| | |||| ||||| || || ||||||||||| ||||| Sbjct 145929 ACCACCACGCAGACGCAGCACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCTGC 145988 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| | | || || |||||||||||||| | || | || ||||||||| || || Sbjct 145989 AAGGGTCCTGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGG 146048 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || ||||| ||| || || | || || | || || Sbjct 146049 GATACCCTCCTTGTCCTGAATTTTGGCCTTCACGTTGTCAATGGTGTCCGAGCTCTCGAC 146108 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| | ||| | |||||| |||||||| || || |||||||| |||||| Sbjct 146109 TTCCAAAGTGATGGTCTTTCCGGTCAAGGTCTTCACGAAAATCTGCATT 146157 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || |||| ||| || |||| |||||||| |||||| Sbjct 146872 GTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTTCGGCCGTCCTCAAGCTGTTTGCCG 146931 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || |||| ||||||||| || || || || || || ||||| || || ||||| Sbjct 146932 GCGAAGATCAGCCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCTTGAATCTTA-GCTTT 146990 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | || ||| | ||||| || | || | |||||||||||| | ||| Sbjct 146991 GACATTATCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGAGT 147050 Query 64426 TTTTACGAAAATTTGCAT 64443 ||| ||||| || ||||| Sbjct 147051 TTTCACGAAGATCTGCAT 147068 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | ||| | || || || || || |||||||| || |||| ||| ||| |||| Sbjct 146629 AGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGCCCGTCC 146688 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||||||| | ||||| | ||||||||| || || || || || || || Sbjct 146689 TCGAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCC 146748 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||| || || | || || | || || || | || | ||| Sbjct 146749 TGGATTTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCAACCTCGAGGGTGATGGTT 146808 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| | || || ||||| |||||||| Sbjct 146809 TTCCCGGTGAGGGTCTTAACGAAGATTTGCAT 146840 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || || | || || || || || || ||||| || || | ||| | | |||| Sbjct 145716 AAGGACAAGGTGGAGGGTAGACTCCTTCTGGATATTGTAGTCCGCCAGGGTCCTCCCGTC 145775 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || ||||||||||| || |||| |||| ||||||||| |||||||| || || || || Sbjct 145776 CTCGAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTC 145835 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || ||| ||| ||| || | || || | || || || | || | ||| Sbjct 145836 CTGAATCTTTGCCTTCACATTGTCGATGGTGTCCGAGCTCTCGACCTCCAAGGTGATGGT 145895 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| ||||| | || || |||||||| ||||| Sbjct 145896 CTTCCCGGTGAGGGTCTTAACGAAAATCTGCAT 145928 Score = 82.4 bits (90), Expect = 8e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | |||| || |||||||| ||||||||||| || |||| ||| || | || Sbjct 146401 AGCACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGGCGAGGGTTCGGCCATCC 146460 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| ||||| | || | | ||||||||| || || || || || || || Sbjct 146461 TCGAGCTGCTTACCGGCGAAGATCAATCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCC 146520 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | | || ||||| ||| || | || || | || || || | || | ||| Sbjct 146521 TGGA-TCTTGGCTTTGACATTGTCAATGGTGTCGGAGCTTTCTACCTCCAAGGTGATGGT 146579 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || ||||| | || || || || ||||||||| Sbjct 146580 TTTCCCGGTGAGGGTCTTGACAAATATTTGCATT 146613 >seq6 Length=1122688 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| ||| || || || || |||||||| || |||| ||| || |||| || |||||| Sbjct 399138 TGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCGGCCGTCCTCGAGCTGC 399197 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || ||||| | || || ||||||||||||||||| || || || || ||||| || || Sbjct 399198 TTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCTTGGATCTTG 399257 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| || | || || || || || || | |||| |||||| || || Sbjct 399258 GCCTTGACATTGTCGATAGTGTCGGAGGACTCGACCTCCAAGGTTATGGTCTTTCCCGTT 399317 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 | ||||| ||||| || ||||| Sbjct 399318 AGGGTTTTCACGAAGATCTGCAT 399340 >seq207 Length=245090 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || |||| ||| || |||| || |||||||| ||| Sbjct 172609 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCGTCCTCCAGCTGCTTTCCG 172550 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || || ||||||||||| || ||||| || || || || || || || ||| Sbjct 172549 GCAAAGATCAGACGCTGCTGGTCCGGCGGAATCCCCTCCTTATCCTGGATCTTCGCCTTC 172490 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || || || || || |||| |||| |||||| || || | ||| Sbjct 172489 ACATTGTCGATGGTGTCCGAGGACTCGACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTT 172430 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| || ||||| || Sbjct 172429 TTCACGAAGATCTGCATCTT 172410 >seq1067 Length=57296 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || |||| |||||||| || || ||||| ||||| || | || | | ||| Sbjct 37184 AGCACAAGGTGAAGGGTCGATTCCTTCTGGATGTTATAATCCGCAAGAGTCCTACCATCT 37243 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||| || || || |||| |||||||||||||| || || ||||| || || ||| Sbjct 37244 TCGAGCTGTTTCCCAGCGAAAATCAGCCGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCT 37303 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || ||| ||| || || | || || | ||||| || | || | |||| Sbjct 37304 TGAATCTTTGCCTTGACGTTATCAATCGTGTCTGAGCTCTCCACCTCAAGGGTGATGGTC 37363 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || || | || || || ||||| |||||| Sbjct 37364 TTTCCTGTAAGCGTCTTGACAAAAATCTGCATT 37396 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || || || || |||||||||||||| || | || | | || Sbjct 36956 AGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCCAAAGTCCTTCCATCC 37015 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | |||||| || ||| |||| | || ||||||||| || || || || || || || Sbjct 37016 TCCAACTGCTTCCCTGCAAAAATCAACCTCTGCTGGTCTGGCGGGATGCCCTCCTTGTCC 37075 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||| ||| || || || || | ||||| || | || | ||| Sbjct 37076 TGAATTTTCGCCTTCACATTGTCGACAGTGTCCGAGCTCTCCACCTCCAAGGTGATCGTC 37135 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || ||||| || || ||||| || ||||| Sbjct 37136 TTCCCAGTCAAGGTCTTCACGAAGATCTGCAT 37167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499469955547800