Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq143 122 9e-23 seq420 105 7e-18 seq6 104 2e-17 seq19 98.7 1e-15 seq168 96.9 3e-15 seq207 93.3 4e-14 >seq143 Length=298601 Score = 122 bits (134), Expect = 9e-23 Identities = 342/517 (66%), Gaps = 16/517 (3%) Strand=Plus/Plus Query 52326 GTGCCGTGCGTTCGCAAA-AAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGC 52384 || || ||||| ||| || ||||| |||||||| | |||||||| || | ||| Sbjct 57990 GTCCCTTGCGT-CGCGAAGAAGGCCCAGTGGGCCCTCCGCTGGATCGA---CGGCTCCGA 58045 Query 52385 CACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAG 52444 | | ||||||||| | | ||||||||| ||||| || | || || ||||| || Sbjct 58046 GTCCTTCGCCGAGCGCCTCATCGCCTTCGCCTGCGTCGAAGGGATCTTCTTCTCCGGAAG 58105 Query 52445 CTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAA 52504 ||| ||||||||| | | || | | || | ||||| || || || ||| ||| Sbjct 58106 CTTCTGCGCCATCTTCTGGCTAAAGAAGCGCGGGTTGATGCCGGGACTCACCTTCTCCAA 58165 Query 52505 CGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGC---CTCTACTACAA 52561 ||||||||| ||||| ||||| || ||||| || || |||||| || |||| || Sbjct 58166 CGAGTTGATCTCGCGAGACGAGGGCTTGCACTGCGATTTCGCGTGCCTTCTGTACT-CAC 58224 Query 52562 GACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGT 52621 || ||| | || || ||| | || | | || || || ||||| Sbjct 58225 TAC-----TGAGGAAGAAGCTGAGCGAGGAGCGGGTCAAGGGGATCGTCCGCGACGCGGT 58279 Query 52622 GGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGC 52681 || ||||| | ||||||| | | |||||||||| || | || |||| |||||| Sbjct 58280 GGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTGCCGTGCGCGTTGGTGGGGATGAACCG 58339 Query 52682 GCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTC-TGTTGGTGCAGCTCGGGC 52740 | | ||| || |||||||||| ||||| || ||||| | | | ||||| ||| ||| Sbjct 58340 GGAACTGATGAGCCAGTACATCGAATTTGTCGCCGATCGGCTTCTGGGTGC-GCTAGGGT 58398 Query 52741 AGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGG 52800 ||| | | | | || |||||||| | ||| | || ||| | ||| Sbjct 58399 GCGGGAAGGTGTACGGAGTGCAGAACCCGTTTGATTGGATGGAGCTGATATCGTTGCAGG 58458 Query 52801 GCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 | ||||||||||| ||||||||| | ||||| ||||| Sbjct 58459 GGAAGACCAACTTCTTCGAGAAGAGGGTCGGTGAGTA 58495 >seq420 Length=153407 Score = 105 bits (116), Expect = 7e-18 Identities = 143/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || ||||||||| || || |||| Sbjct 119128 GACTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCGGCCGTCCTCGAGCTGCTTGCCGGCG 119187 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGAT-TTTTTGTTTTAA 138539 |||| || ||||| |||||||| || || || || ||||| ||| || | || | Sbjct 119188 AAGATGAGGCGCTGCTGGTCCGGCGGGATTCCCTCCTTGTCCTGGATCTTGGTCTTCACA 119247 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||||| ||||| ||||||| || | || || || || || ||||| Sbjct 119248 TTG-TCGATGGTGTCGGAGGACTCAACCTCGAGGGTTATGGTCTTCCCCGTTAGGGTTTT 119306 Query 138600 TACAAAAATCTGCATGG 138616 || || |||||||||| Sbjct 119307 CACGAAGATCTGCATGG 119323 >seq6 Length=1122688 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || ||||||||| || || |||| Sbjct 399147 GACTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCGGCCGTCCTCGAGCTGCTTTCCGGCG 399206 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| ||||| ||||| ||||| || ||||| ||| || || | | Sbjct 399207 AAGATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACA 399266 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||||||| ||||| ||||| | || | || || || || || ||||| Sbjct 399267 TTG-TCGATAGTGTCGGAGGACTCGACCTCCAAGGTTATGGTCTTTCCCGTTAGGGTTTT 399325 Query 138600 TACAAAAATCTGCATGGCT 138618 || || |||||||||||| Sbjct 399326 CACGAAGATCTGCATGGCT 399344 >seq19 Length=713669 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || ||||||||||| | || || |||||| || ||||| |||| | Sbjct 623097 CTCCTTCTGGATGTTGTAGTCCGCGAGGGTGCGACCGTCCTCAAGCTGTTTCCCGGCGAA 623156 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 ||| || | ||| |||||||| || |||||||| ||||| ||| || ||| | | Sbjct 623157 GATAAGCCTCTGCTGGTCCGGGGGAATACCTTCCTTGTCCTGGATCTTGGCTTTCACGTT 623216 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | |||||||| ||| ||||| | || | ||| || || || || ||||| || Sbjct 623217 GTCGATGGTGTCGGAGCTCTCGACCTCAAGGGTGATCGTCTTGCCGGTGAGGGTTTTCAC 623276 Query 138603 AAAAATCTGCAT 138614 |||||||||||| Sbjct 623277 AAAAATCTGCAT 623288 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||| | || || |||||| || || || |||| | Sbjct 623325 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCGTCCTCCAGCTGCTTTCCGGCGAA 623384 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 ||| |||||||| ||||||||||| || ||||| || || ||| || || | | Sbjct 623385 GATCAGACGCTGCTGGTCCGGAGGAATCCCTTCCTTATCCTGGATCTTGGCCTTGACGTT 623444 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | |||||||| ||||||||| | || | ||| || || || || ||||| || Sbjct 623445 GTCGATGGTGTCGGAGCTCTCCACCTCCAGGGTGATCGTCTTTCCGGTTAGGGTTTTCAC 623504 Query 138603 AAAAATCTGCAT 138614 ||| |||||||| Sbjct 623505 AAATATCTGCAT 623516 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||| ||| | || || ||||||||| || || |||| Sbjct 623779 GACTCCTTCTGGATGTTGTAATCGGCGAGGGTCCGGCCGTCCTCGAGCTGCTTGCCGGCG 623838 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||||||||| || || || ||||| ||| || || | Sbjct 623839 AAGATCAGACGCTGCTGGTCCGGAGGAATCCCCTCCTTGTCTTGGATCTTGGCCTTGACG 623898 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| ||| ||||||| || | || || || || || ||||| Sbjct 623899 TTGTCGATGGTGTCGGAGCTCTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTTTTG 623958 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 623959 ACGAAGATCTGCAT 623972 >seq168 Length=274740 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | |||||| || || || | |||||||||| || ||||||||||| | Sbjct 146158 CCACCACGAAGACGCAACACCAAGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCAGCC 146217 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| |||||||||||||| || | | |||| | | ||| ||||| || || Sbjct 146218 AGGGTACGTCCATCCTCGAGTTGTTTGCCCGCAAAGATCAACCTCTGCTGGTCTGGTGGG 146277 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | || | || |||| || | |||||||| || | Sbjct 146278 ATGCCCTCCTTGTC-TTGAATCTTGGCCTTGACATTG-TCAATGGTGTCGGAGCTTTCAA 146335 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || || || ||||| || |||||||||||||| Sbjct 146336 CCTCCAAGGTGATGGTCTTTCCGGTGAGAGTCTTAACAAAAATCTGCAT 146384 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || ||||| | | | |||||||| || |||||||||||| Sbjct 146614 CCTCCACGAAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 146673 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || ||| ||||||||| || || |||| | |||| || | ||| ||||| || || Sbjct 146674 AGGGTTCGCCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGGTCTGGGGGG 146733 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| |||||| || | | || | |||||||| ||| ||| Sbjct 146734 ATGCCCTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCAACC 146793 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | ||||| || || || || || || || || ||||| Sbjct 146794 TCGAGGGTGATGGTTTTCCCGGTGAGGGTCTTAACGAAGATTTGCAT 146840 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || |||||| || ||||| |||| Sbjct 146875 GACTCCTTCTGGATGTTGTAGTCAGCGAGGGTTCGGCCGTCCTCAAGCTGTTTGCCGGCG 146934 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 |||| || | ||| |||||||| || ||||| || ||||| ||| | || | ||| | Sbjct 146935 AAGATCAGCCTCTGCTGGTCCGGTGGGATACCCTCCTTGTC-TTGAATCTTAGCTTTGAC 146993 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | |||||| | |||||||||| || | || || || || |||||||| Sbjct 146994 ATTATCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTTTT 147053 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 147054 CACGAAGATCTGCAT 147068 >seq207 Length=245090 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || |||||| || || || |||| | Sbjct 172606 GACTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCGTCCTCCAGCTGCTTTCCGGCA 172547 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| |||||||| |||||||| || || || || || || ||| || || | | Sbjct 172546 AAGATCAGACGCTGCTGGTCCGGCGGAATCCCCTCCTTATCCTGGATCTTCGCCTTCACA 172487 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||| | ||||| ||||| | || | || || || || || ||||| Sbjct 172486 TTG-TCGATGGTGTCCGAGGACTCGACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTT 172428 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 172427 CACGAAGATCTGCAT 172413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496088739176400