Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27]
27,995 sequences; 247,090,738 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq19 86.0 4e-12
>seq19
Length=713669
Score = 86.0 bits (94), Expect = 4e-12
Identities = 143/207 (69%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
|| || || || || || || |||||||||||| ||| | | ||||||| | ||
Sbjct 628731 TGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTCCGGCCGTCTTCGAGCTGC 628790
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| |||||| | |||| |||||| ||||| || |||||||||||||| || |||
Sbjct 628791 TTTCCAGCGAAGATCAGACGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCCTGGATCTTG 628850
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
|| || | || || || ||| | || || || | || ||||| || || ||
Sbjct 628851 GCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGAGTTATGGTCTTGCCGGTT 628910
Query 15154 AGAGTTTTTACAAAAATTTGCATATTT 15180
|| ||||| || || || |||||||||
Sbjct 628911 AGGGTTTTGACGAAGATCTGCATATTT 628937
Score = 82.4 bits (90), Expect = 5e-11
Identities = 143/208 (69%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032
||| || ||||| || || || |||||||||||| ||| | | |||| || | ||
Sbjct 623769 ATGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGCGAGGGTCCGGCCGTCCTCGAGCTG 623828
Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092
||||| ||| | |||| |||||| ||||| ||||| || |||||||| || ||
Sbjct 623829 CTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGAATCCCCTCCTTGTCTTGGATCTT 623888
Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152
| || || | || || || ||| | || || || | || ||||| || || ||
Sbjct 623889 GGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGAGTGATGGTCTTGCCGGT 623948
Query 15153 CAGAGTTTTTACAAAAATTTGCATATTT 15180
|| ||||| || || || |||||||||
Sbjct 623949 GAGGGTTTTGACGAAGATCTGCATATTT 623976
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357270061758575
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |