Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq1 190 3e-43 seq716 187 3e-42 seq257 174 2e-38 seq168 131 2e-25 seq272 120 4e-22 >seq1 Length=1764766 Score = 190 bits (210), Expect = 3e-43 Identities = 256/354 (72%), Gaps = 2/354 (1%) Strand=Plus/Plus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 |||||||| || | | | || || ||||| |||| |||||||||||| || ||||| Sbjct 982957 AGAGCGTTTCCACGAGATAGAACCTCCTCAGGGAATATAAAGTTTTCATGAGGCTGATCT 983016 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 | |||||||| ||||| | ||| || || || || || || ||||| ||| | ||| Sbjct 983017 TGAGCCGCCATCCAAGCACGAATACCCTCGTTTAAGAGAATATTTTTGGTGTAGCAAGTC 983076 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGG 6442 || || || ||||| |||||||| | ||| ||||| ||||| |||||||| || | || Sbjct 983077 TCAAATTCAGGATCTTCCGCTGCACGGATTTCTTGAGAAACGAAGTCATAGGCACGTAGA 983136 Query 6443 TTAAGTGCAAGACC-AATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAA 6501 || | || ||||| | || | | || || | |||| | ||| | || || ||||| Sbjct 983137 TTCAAAGCCAGACCGACTACTCCAAAAGC-ACTCATCCATAAACCAGTTACTGGTACAAA 983195 Query 6502 CAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCA 6561 | |||||||||||||| ||||| |||||| || || | |||||||| || ||||| Sbjct 983196 TAACATAAAGAAATGTAACCAACATTTATTGGAAAAAGCAACCCCAAAGATTTGGGACCA 983255 Query 6562 GAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAA 6615 || || ||||| || ||||| ||||| || || || |||| || || | ||| Sbjct 983256 AAAGCGGTTAGCGGTAACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAA 983309 >seq716 Length=92840 Score = 187 bits (206), Expect = 3e-42 Identities = 207/276 (75%), Gaps = 0/276 (0%) Strand=Plus/Plus Query 7781 GCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGGTCTCT 7840 || ||||||||||||| || ||||| || || ||||| || || || || ||||| ||| Sbjct 33918 GCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATATTATAGGTTTCT 33977 Query 7841 TCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTCACGAACC 7900 || ||||||||||| | ||||| | || || ||| || ||||||| | | | Sbjct 33978 TCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTTCCTTATC 34037 Query 7901 AGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGACACCA 7960 | | ||||||||| | |||||||| || |||||||| || || || || || |||||| Sbjct 34038 AAACTAGAGGTTACCAAGGAACCATGTATAGCACTGAATAGGGAGCCGCCGAATACACCA 34097 Query 7961 GCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACAAGC 8020 || || || | ||| | || |||||||| ||||| | |||||| ||||| || |||| | Sbjct 34098 GCTACACCTAACATAAGAAATGGGTGCATAAGGATATAGTGCTCAGCTTGAAATACAATC 34157 Query 8021 ATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATA 8056 || ||||||| |||| |||||| || ||||||||| Sbjct 34158 ATAAAGTTGAAAGTACTAGAGATTCCTAGAGGCATA 34193 >seq257 Length=213233 Score = 174 bits (192), Expect = 2e-38 Identities = 251/352 (71%), Gaps = 4/352 (1%) Strand=Plus/Plus Query 6545 CCAAAGATCTGAGACCAGAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGT 6604 |||||||| || ||||| || | ||||| || ||||| ||||| || | || ||| Sbjct 14136 CCAAAGATTTGGGACCAAAAGCAGTTAGCGGTAACCATTGAATAAGTTTATTCAGTTTGA 14195 Query 6605 GTAGGCTCAAACGCCTTGAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCT 6664 || || | ||| | ||| |||||| ||| |||||||||| || ||||| ||| Sbjct 14196 GTTGGGTTAAAAGTAGGGAATGTATTTACACCATCATCATCTTCAAATAAGGTATTTTCT 14255 Query 6665 ACAGTAGCACCGTGAATAGCACAGAGCAATGCTCCACCTAAGATACCT--GCTACACCCA 6722 | |||| | ||||||||||| |||| || |||| | |||||| || || |||| Sbjct 14256 ATGGTAGTGTCATGAATAGCACATAGCATAGCAGCACCCA--ATACCTCGGCAACTCCCA 14313 Query 6723 TCATATGAAACGGGTTGAGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGA 6782 |||| ||||| | ||| | ||||| || | || || || | || || | ||| || | Sbjct 14314 TCATGTGAAATGAGTTCAATGTCCAATTATAAAACCCTTGGAAAAATAGGATGAATCGAA 14373 Query 6783 ATATCGCTGCAACACCAAACGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACA 6842 |||| ||||| |||||||| || ||||||||||||| |||| || ||||| | Sbjct 14374 ATATAGCTGCTACACCAAAATTGGGTGCAAAGAACCAACCAAACTGACCTTATGGATAAA 14433 Query 6843 TGAGAAAGACAGACACAAAGACAGCAATGGGACCAGAAAACGCGATTGCATT 6894 | || || ||||| ||||| ||| |||| ||| | || || ||||||||||| Sbjct 14434 TCAGGAATACAGAAACAAAAACAACAATTGGAGCGGAGAATGCGATTGCATT 14485 >seq168 Length=274740 Score = 131 bits (144), Expect = 2e-25 Identities = 149/199 (75%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 7533 CAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAA 7592 |||| || ||||| |||| |||||| ||||||||||| || ||||| |||||||| |||| Sbjct 245432 CAGCCGCTAGGTCTAGAGAGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAA 245373 Query 7593 GACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGA 7652 || ||||||||| | | | || |||| || | |||||||||| || ||||| | Sbjct 245372 GATTAGCACGGTTAATGATATTAACCTAGGTATTAATTACACGACCTTAACTATCAACTA 245313 Query 7653 TGGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAG 7712 | || ||||| || ||||| || | ||| || |||||| |||||| ||| | || || Sbjct 245312 CAAATTGATTGAAATTAAAACCATTTAAGTTAAAAGCCATGATGCTAATACCTAAAG-AG 245254 Query 7713 TGAACCAGATGCCAACAAC 7731 | ||||| || || || || Sbjct 245253 TAAACCAAATACCTACTAC 245235 >seq272 Length=206342 Score = 120 bits (132), Expect = 4e-22 Identities = 288/429 (67%), Gaps = 14/429 (3%) Strand=Plus/Plus Query 6638 TCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATAGCACAGAGCAATGCT 6697 |||||||||||||| |||||||| ||||| |||| || || |||||||| |||| ||| Sbjct 146654 TCACCATCTTCAAATAAAGTATTGTCTACGATAGCGCCATGGATAGCACATAGCAGTGCA 146713 Query 6698 CCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGCGTCCAGTTGTGGAAG 6757 || |||| | || || || |||||||| ||||| ||||| | |||| || || || Sbjct 146714 ACA-CTAATACCCCAGCAACTCCCATCATGTGAAATGGGTTAAATTTCCAATTATGAAAC 146772 Query 6758 CCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAACGACGGCGCAAAGAAC 6817 || || | ||||| || || ||||| ||| | || | ||| || | ||| ||| Sbjct 146773 CCTTGGAAAAAGAGGGTAAATCGTAATATAGCTACTACGCTAAAACTGGGTGTAAAAAAC 146832 Query 6818 CAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAAGACAGCAATGGGACCA 6877 || ||||| | | ||||| || | || ||||| |||| ||| |||| ||| | Sbjct 146833 CA----GACTGAACTAACGGATAAATCAAGAATACAGAACCAAAAACAACAATTGGAGCG 146888 Query 6878 GAAAACGCGATT---GCATTGTAGGGACGAATACCGACTAGA-CGTGCGATCTCAAACTG 6933 || || | |||| ||| || ||| | | || ||| || || | ||||| || Sbjct 146889 GAGAATGTGATTATAATATTATAAGGA-TACAATTGAACAGATCGAGCAAGTTCAAATTG 146947 Query 6934 CCGAAGCATGAAACCTATAAG--GGCAAAGGCTCCGTGGAGCGCCACAAAAGGCCATAGT 6991 || | | |||||||| || | ||| | || || || | ||||||| ||| || Sbjct 146948 ACGTAATGTAAAACCTATTAGTTTGAAAATG--CCATGAAGAACAACAAAAGTCCACAGA 147005 Query 6992 CCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCCATAGAAGAAGT 7051 || | | ||| ||| || ||||| | || ||||| ||| ||||||| | | | Sbjct 147006 CCACTTATTTGACACCAACGAGTAAAATCGCATTGTGCTTCAGGATCCCATAGTAACATT 147065 Query 7052 AGGGAATGT 7060 | |||||| Sbjct 147066 AAAGAATGT 147074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621907095202800