Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq143 96.9 4e-15 seq113 87.8 2e-12 >seq143 Length=298601 Score = 96.9 bits (106), Expect = 4e-15 Identities = 174/254 (69%), Gaps = 3/254 (1%) Strand=Plus/Minus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 |||||||| || ||||| | || || |||||| || || ||||| | || |||||| Sbjct 58189 CCCTCGTCTCGCGAGATCAACTCGTTGGAGAAGGTGAGTCCCGGCATCAACCCGCGCTTC 58130 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | |||||| || || || || || |||||||||||||| || || || ||||| Sbjct 58129 TTTAGCCAGAAGATGGCGCAGAAGCTTCCGGAGAAGAAGATCCCTTCGACGCAGGCGAAG 58070 Query 127658 GCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGT 127717 || | || |||||||| ||||| ||| || | ||| | |||||||| Sbjct 58069 GCGATGAGGCGCTCGGCGAAGGACTCGGA---GCCGTCGATCCAGCGGAGGGCCCACTGG 58013 Query 127718 GCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCTGAT 127777 ||||| ||| ||| || ||||| || | ||| || ||||| |||| || | Sbjct 58012 GCCTTCTTCGCGACGCAAGGGACAGTGTCGATGGCGCGGAAGAGGCGGCTCTTCTCGGCG 57953 Query 127778 GGATCTTTGATGTA 127791 | ||| |||||||| Sbjct 57952 GAATCCTTGATGTA 57939 >seq113 Length=343576 Score = 87.8 bits (96), Expect = 2e-12 Identities = 189/278 (68%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851 || || |||||||| |||||||| || || || || || || | ||||||||| | | Sbjct 221178 AACCCGTCCATCTCCGTCAAGAGCTGGTTAATAGTCTGCTCTCTCTCATCATTCCCT--C 221121 Query 12852 ATACCACCC--GCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATAC 12909 | | | || || | | ||| | || ||||| ||||| || |||||||| || |||| Sbjct 221120 CTCCAAGCCCAGCTCCTCTCTGCCTCCCAACGGCATCAATCTCATCAATGAACACAATAC 221061 Query 12910 ACGGTTGATTTTCACGG-GCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 12968 |||| | ||| || || || || | ||| | ||||||| || || || ||| Sbjct 221060 ACGGC-GCTTTCGACTTCGCCTTCTCGAACAAATCCCTCACTCTCGACGCCCCAACTCCC 221002 Query 12969 ACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCC 13028 ||||||| |||||| || | | || | ||| || ||| || || | ||| || Sbjct 221001 ACAAACAACTCCACGAACTCCGAAGCCGCACACGAGAAGAACGGCACTCCAGCTTCTCCG 220942 Query 13029 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 || | ||| ||||| | ||||||||||| || || || Sbjct 220941 GCCACGGCCCGGGCCAAAAGGGTCTTCCCGGTACCGGG 220904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613292510824200