Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq143 190 3e-43 >seq143 Length=298601 Score = 190 bits (210), Expect = 3e-43 Identities = 548/834 (66%), Gaps = 13/834 (2%) Strand=Plus/Minus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707 |||||||||| ||||||||||| |||| || ||||| ||||| | | || |||| Sbjct 58482 TCTTCTCGAAGAAGTTGGTCTTCCCCTGCAACGATATCAGCTCCATCCAATCAAACGGGT 58423 Query 159708 TCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767 ||| ||| || |||| | || || || |||| | || || || ||||||| Sbjct 58422 TCTGCACTCCGTACACCTTCCCGCACCCTAGCGCACCCAGAAGCCGATCGGCGACAAATT 58363 Query 159768 CGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGC-CTAACGGGGAGCGCTTCC 159826 ||||||| | |||| | || | ||| ||||||| || | | |||| ||||| || Sbjct 58362 CGATGTACTGGCTCATCAGTTCCCGGTTCATCCCCACCAACGCGCACGGC-AGCGCGTCG 58304 Query 159827 GACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTAC 159886 ||| ||||||| |||| ||||| ||||| ||| || ||| | ||| || || | Sbjct 58303 CACACAAACTCCCTCTCGATCTCCACCGCGTCGCGGACGATCCCCTTGACCCGCTCCTCG 58244 Query 159887 CCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCC 159946 | | |||| | | || || || ||| |||||||| || |||||||||| ||| Sbjct 58243 CTCAGCTTCTTCCTCA-GTAGTGAGTA--CAGAAGGCACGCGAAATCGCAGTGCAAGCCC 58187 Query 159947 TCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTG 160006 ||||| || ||||| ||||||||||| | | |||| |||||||| | ||| ||| || Sbjct 58186 TCGTCTCGCGAGATCAACTCGTTGGAGAAGGTGAGTCCCGGCATCAACCCGCGCTTCTTT 58127 Query 160007 AGCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGC 160065 ||||| || |||| |||| |||| ||| || |||||||| || ||| || || || Sbjct 58126 AGCCAGAAGATGG-CGCAGAAGCTTCCGGAGAAGAAGATCCCTTCGACGCAGGCGAAGGC 58068 Query 160066 CACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGC 160125 | ||| | ||| | | ||| | || | | | | |||| | |||||| | || Sbjct 58067 GATGAGGCGCTCGGCGA---AGGACTCGGAGCCGTCGATCCAGCGGAGGGCCCACTGGGC 58011 Query 160126 CTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCAC 160185 |||||| |||| ||| || | |||| |||| || | | | || ||| Sbjct 58010 CTTCTTCGCGACGCAAGGGACAGTGTCGATGGCGCGGAAGAGGCGGCTCTTCTCGGCGGA 57951 Query 160186 ATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATGGC 160245 ||||||||| || | | || ||||||||| | ||| | || |||||||| Sbjct 57950 ATCCTTGATGTAGGTCTCGAGGAGGAGGCTGTACATTTCGGAGTGGATGTTCTCGATGGC 57891 Query 160246 CATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACCTTTG 160305 ||||| ||| |||||| ||||||| ||| ||||||| |||||| Sbjct 57890 GATCTGGAAGCCGTAGAAGGCACGCGCCTCCGCGACCTGGACCTCCTTCATGAACCCACC 57831 Query 160306 ACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGAT 160365 | ||||| | || | ||||||| ||| || ||||| || | ||||| | ||| Sbjct 57830 GGCGAGATTCTCTAGGACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGGGTGAT 57771 Query 160366 GAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGCCAAATC 160425 ||| || ||||||| | |||| ||| | || | ||| |||| | || Sbjct 57770 GAAGTGCTTCTCGTCGGGGGTGAG---GGCTTCGAACTGGCGGATGTCCTGGGAGAGGTC 57714 Query 160426 AACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGAT 160479 ||||| || ||| ||||| | |||| || | |||||||| ||||||| Sbjct 57713 GACCTCCTCGGCGGTCCAAAACGAGGCCTCGGCCTTCTTGTACATCTCCCAGAT 57660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794876945377200