Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq420 134 2e-26 seq6 131 2e-25 seq168 127 2e-24 seq19 127 2e-24 seq207 109 6e-19 seq1067 87.8 2e-12 >seq420 Length=153407 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || | || | |||||| || | || |||||| ||||| |||||||||| Sbjct 119095 CCTCCCCTAAGGCGGAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 119154 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || |||| |||||||||||||||||||| || | |||||||||||| | ||| Sbjct 119155 AGGGTCCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 119214 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||||||| |||||| |||| | | | | |||||| || || || Sbjct 119215 ATTCCCTCCTTGTCCTGGATCTTGGTCTTCACATTGTCGATGGTGTCGGAGGACTCAACC 119274 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | || ||||| || ||||| || ||||| || ||||| ||||| Sbjct 119275 TCGAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 119321 >seq6 Length=1122688 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| || || || |||| ||||||||||| |||||||| Sbjct 399149 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 399208 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||||||||| || | | ||||||||| |||||| ||||| | Sbjct 399209 GATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATT 399268 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| || || || |||| || ||||| || ||||| || ||||| || Sbjct 399269 GTCGATAGTGTCGGAGGACTCGACCTCCAAGGTTATGGTCTTTCCCGTTAGGGTTTTCAC 399328 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 399329 GAAGATCTGCAT 399340 >seq168 Length=274740 Score = 127 bits (140), Expect = 2e-24 Identities = 169/231 (73%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||| | ||||| ||| | || |||||| ||||| |||||||||| Sbjct 146614 CCTCCACGAAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 146673 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || ||| |||| ||||||||||||||||| || || | | ||||||||| | || Sbjct 146674 AGGGTTCGCCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGGTCTGGGGGG 146733 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 46542 | || |||||||||| ||| || ||||| ||| | | | ||||| |||| || Sbjct 146734 ATGCCCTCCTTGTCCTGGATTTTGGCCTTGA-CGTTGTCAATGGTGTCGGAGCTC---TC 146789 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | ||||||||||| || || || || ||||| ||||||||||| Sbjct 146790 AACCTCGAGGGTGATGGTTTTCCCGGTGAGGGTCTTAACGAAGATTTGCAT 146840 Score = 113 bits (124), Expect = 5e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || || || || |||||||||| || || || | || ||||||||||| |||||||| Sbjct 146422 TCTTTCTGAATGTTGTAGTCGGCGAGGGTTCGGCCATCCTCGAGCTGCTTACCGGCGAAG 146481 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | ||||||||| | || | || |||||||||| |||||| |||| | Sbjct 146482 ATCAATCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCTTTGACATTG 146541 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| ||| || |||| ||||||||||| || || || || || ||| Sbjct 146542 TCAATGGTGTCGGAGCTTTCTACCTCCAAGGTGATGGTTTTCCCGGTGAGGGTCTTGACA 146601 Query 46583 AAGATTTGCATT 46594 || ||||||||| Sbjct 146602 AATATTTGCATT 146613 Score = 105 bits (116), Expect = 8e-18 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| |||||||||||||| | || || | | |||| |||||||||||||| ||||| Sbjct 145737 CTCCTTCTGGATATTGTAGTCCGCCAGGGTCCTCCCGTCCTCGAGCTGCTTGCCAGCGAA 145796 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | ||||||||| | || | || |||||||||| ||||| ||| | | Sbjct 145797 AATCAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATT 145856 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | ||||| |||| || || |||| |||||||| || || || || || || Sbjct 145857 GTCGATGGTGTCCGAGCTC---TCGACCTCCAAGGTGATGGTCTTCCCGGTGAGGGTCTT 145913 Query 46579 AACAAAGATTTGCAT 46593 ||| || || ||||| Sbjct 145914 AACGAAAATCTGCAT 145928 Score = 102 bits (112), Expect = 9e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||||| || | || |||||| ||||| |||||||| | || || || | Sbjct 146169 ACGCAACACCAAGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGTCC 146228 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || ||||| || ||||| || || ||||| | ||||||||| | || | || |||||| Sbjct 146229 ATCCTCGAGTTGTTTGCCCGCAAAGATCAACCTCTGCTGGTCTGGTGGGATGCCCTCCTT 146288 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| ||||| ||||| | | | |||||| ||| || |||| ||||| Sbjct 146289 GTCTTGAATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTTTCAACCTCCAAGGTGAT 146348 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || || || || |||||||| || ||||| Sbjct 146349 GGTCTTTCCGGTGAGAGTCTTAACAAAAATCTGCAT 146384 Score = 96.9 bits (106), Expect = 4e-15 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| | || || || |||| || ||||| ||||||||||| Sbjct 146877 CTCCTTCTGGATGTTGTAGTCAGCGAGGGTTCGGCCGTCCTCAAGCTGTTTGCCGGCGAA 146936 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | ||||||||| | || | | ||||||||| ||||| |||| | Sbjct 146937 GATCAGCCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCTTGAATCTTAGCTTTGACATT 146996 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | ||||| ||| |||||| || | |||||||| ||||| || || ||||| Sbjct 146997 ATCGATGGTGTCAGAGCT---TTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTTTT 147053 Query 46579 AACAAAGATTTGCAT 46593 || ||||| ||||| Sbjct 147054 CACGAAGATCTGCAT 147068 Score = 91.5 bits (100), Expect = 2e-13 Identities = 155/221 (70%), Gaps = 8/221 (4%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| ||||| || | || |||||| || || |||||||| | || || | | Sbjct 145941 ACGCAGCACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCTGCAAGGGTCCTGCC 146000 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || |||||||||||||||||||| ||||| | ||||||||| | || | | |||||| Sbjct 146001 ATCCTCGAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGGATACCCTCCTT 146060 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCG 46553 |||| || || ||| | ||| | | | ||||| |||| || || |||| | Sbjct 146061 GTCCTGAATTTTGGCCTTCA-CGTTGTCAATGGTGTCCGAGCTC---TCGACTTCCAAAG 146116 Query 46554 TGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 ||||||| || || |||| || || || || || |||||| Sbjct 146117 TGATGGTCTTTCCGGTCAAGGTCTTCACGAAAATCTGCATT 146157 >seq19 Length=713669 Score = 127 bits (140), Expect = 2e-24 Identities = 169/231 (73%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||| | ||||||||| | || |||||||| ||||| |||||||||| Sbjct 623290 CCTCCACGGAGACGGAGCACCAGATGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGCG 623349 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || |||| || |||||||| |||||||| |||| ||||||||||| | || Sbjct 623350 AGGGTTCGGCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGA 623409 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 46542 | | ||||| ||| |||||| ||||| ||| | | | ||||| |||| || Sbjct 623410 ATCCCTTCCTTATCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTC---TC 623465 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| |||| ||||| || || || || || ||||| ||||| || ||||| Sbjct 623466 CACCTCCAGGGTGATCGTCTTTCCGGTTAGGGTTTTCACAAATATCTGCAT 623516 Score = 127 bits (140), Expect = 2e-24 Identities = 171/234 (73%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||| | |||||||| | ||| |||||| ||||| ||||| |||| Sbjct 623746 CCTCCACGGAGACGAAGGACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGCG 623805 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || |||| |||||||||||||||||||| |||| ||||||||||| | || Sbjct 623806 AGGGTCCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGA 623865 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 46542 | | ||||||||| |||||| ||||| ||| | | | ||||| |||| || Sbjct 623866 ATCCCCTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTC---TC 623921 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || || | |||||||| ||||| || || ||||| || ||||| ||||| || Sbjct 623922 GACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTTTTGACGAAGATCTGCATATT 623975 Score = 109 bits (120), Expect = 6e-19 Identities = 146/199 (73%), Gaps = 8/199 (4%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| |||| || || || |||| ||||||||||| || ||||| Sbjct 628742 CTCCTTCTGGATGTTGTAATCGGCGAGGGTCCGGCCGTCTTCGAGCTGCTTTCCAGCGAA 628801 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| ||||||||||| | ||| | | ||||||||| |||||| ||||| ||| Sbjct 628802 GATCAGACGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 628860 Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | ||||| |||| || || || | || ||||| ||||| || || |||| Sbjct 628861 TGTCGATGGTGTCGGAGCTC---TCGACCTCGAGAGTTATGGTCTTGCCGGTTAGGGTTT 628917 Query 46578 TAACAAAGATTTGCATTTT 46596 | || ||||| ||||| || Sbjct 628918 TGACGAAGATCTGCATATT 628936 Score = 107 bits (118), Expect = 2e-18 Identities = 154/213 (72%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||||||||| || |||||| ||||| ||||| |||| || ||||| |||| || Sbjct 623536 ACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGACCGTCCTCC 623595 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 | ||||||||||||||| |||| | ||||||||| | ||| | | ||||| ||| | Sbjct 623596 AACTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGCGGGATTCCTTCCTTATCCTGG 623655 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGT 46560 ||||| ||||| ||| | | | |||||| |||| || || || | || || || Sbjct 623656 ATCTTGGCCTTGA-CGTTGTCGATCGTGTCAGAGCTC---TCGACTTCTAGGGTTATCGT 623711 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || ||||| || ||||| ||||| Sbjct 623712 CTTACCGGTTAGGGTTTTGACGAAGATCTGCAT 623744 Score = 105 bits (116), Expect = 8e-18 Identities = 144/197 (73%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||||||||| || | || ||||| | || || | |||||| ||||| || Sbjct 622869 CTCCTTCTGGATATTGTAATCAGCAAGGGTGCGACCATCCTCCAACTGCTTCCCGGCAAA 622928 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| ||||||||||| | || | | |||||||||| ||||||| ||| | ||| Sbjct 622929 GATCAGACGCTGCTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGT 622987 Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | ||||| |||| || || || | ||||| || |||||||| || || | Sbjct 622988 TGTCGATTGTGTCCGAGCTC---TCAACCTCGAGGGTGATCGTCTTGCCCGTGAGGGTCT 623044 Query 46578 TAACAAAGATTTGCATT 46594 | |||||||| |||||| Sbjct 623045 TGACAAAGATCTGCATT 623061 >seq207 Length=245090 Score = 109 bits (120), Expect = 6e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| || || || |||| || |||||||| ||||| || Sbjct 172604 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCGTCCTCCAGCTGCTTTCCGGCAAA 172545 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| ||||||||||| | ||| | | |||||| ||| ||||||| ||| | | Sbjct 172544 GATCAGACGCTGCTGGTCCGGCGGAATCCCCTCCTTATCCTGGATCTTCGCCTTCACATT 172485 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| || || || || | || ||||| || ||||| || ||||| || Sbjct 172484 GTCGATGGTGTCCGAGGACTCGACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCAC 172425 Query 46582 AAAGATTTGCATTTT 46596 ||||| ||||| || Sbjct 172424 GAAGATCTGCATCTT 172410 >seq1067 Length=57296 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/233 (69%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | |||| ||| || || | || ||||| ||||| || || || | Sbjct 37167 TGCCACCCCTCAGGCGCAGCACAAGGTGAAGGGTCGATTCCTTCTGGATGTTATAATCCG 37226 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 ||||| | | || |||||||| || || ||||| |||| ||||||||||| | | Sbjct 37227 CAAGAGTCCTACCATCTTCGAGCTGTTTCCCAGCGAAAATCAGCCGCTGCTGGTCAGGGG 37286 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATT 46541 | | | ||||||||| ||||| ||||| | | | |||||| |||| | Sbjct 37287 GGATTCCCTCCTTGTCTTGAATCTTTGCCTTGACGTTATCAATCGTGTCTGAGCTC---T 37343 Query 46542 CCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| || | |||||||| || || || ||||| || ||||| || |||||| Sbjct 37344 CCACCTCAAGGGTGATGGTCTTTCCTGTAAGCGTCTTGACAAAAATCTGCATT 37396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565040601887400