Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq1067 96.9 2e-15 >seq1067 Length=57296 Score = 96.9 bits (106), Expect = 2e-15 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || || || ||||| |||||| | | |||| ||||| || ||||| ||||| Sbjct 36977 TCCTTCTGAATGTTGTAATCAGCCAAAGTCCTTCCATCCTCCAACTGCTTCCCTGCAAAA 37036 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTG--TTTA-ATC 39645 || || | |||||| || | || | ||| || ||||| | | |||| | || | || Sbjct 37037 ATCAACCTCTGCTGGTCTGGCGGGATGCCCTCCTTGTC-CTGAATTTTCGCCTTCACATT 37095 Query 39646 GTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTT 39705 |||| || ||||| | ||| ||||| ||||| || || || || || || || || || Sbjct 37096 GTCG--ACAGTGTCCGAGCTCTCCACCTCCAAGGTGATCGTCTTCCCAGTCAAGGTCTTC 37153 Query 39706 ACGAAGATCTGCATG 39720 ||||||||||||||| Sbjct 37154 ACGAAGATCTGCATG 37168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347251081291835