Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1067 104 9e-17 seq343 98.7 4e-15 seq353 96.9 1e-14 seq167 86.0 2e-11 seq56 84.2 9e-11 >seq1067 Length=57296 Score = 104 bits (114), Expect = 9e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| || || || || || || || || || || ||||| || || || Sbjct 37396 AATGCAGATTTTTGTCAAGACGCTTACAGGAAAGACCATCACCCTTGAGGTGGAGAGCTC 37337 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | ||||| | || ||| |||||||| ||||| ||||| || ||||| || Sbjct 37336 AGACACGATTGATAACGTCAAGGCAAAGATTCAAGACAAGGAGGGAATCCCCCCTGACCA 37277 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || || | |||||| | |||||||| || |||||||| || ||| | ||||||||||| Sbjct 37276 GCAGCGGCTGATTTTCGCTGGGAAACAGCTCGAAGATGGTAGGACTCTTGCGGATTATAA 37217 Query 391229 TATTGATAAGGATGCAACACTTCAC 391253 || | ||||| | || |||||| Sbjct 37216 CATCCAGAAGGAATCGACCCTTCAC 37192 >seq343 Length=177656 Score = 98.7 bits (108), Expect = 4e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 391138 TTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAACAAC 391197 |||| || ||||||||||||||||| ||||| || | || ||||| | ||||| ||| Sbjct 100847 TTCAGGACAAGGAAGGAATTCCTCCGGATCAGCAGAGATTGATTTTTGCTGGGAAGCAAT 100788 Query 391198 TTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCACTTAG 391257 | |||||||| || ||| | |||||||| || ||| | ||||| |||| ||||| | | Sbjct 100787 TGGAAGATGGGAGGACTCTTGCGGATTACAACATTCAGAAGGAGTCAACTCTTCATCTGG 100728 Query 391258 TATTAAGACTGAGAGGA 391274 | || || || || ||| Sbjct 100727 TTTTGAGGCTTAGGGGA 100711 >seq353 Length=174248 Score = 96.9 bits (106), Expect = 1e-14 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 |||||||| || ||||| ||||| ||||| || |||| | ||| | | || Sbjct 14642 GTTCTTACCAAGATGAAGGAAACTGCAGAGGCTTACCTTGGAAAGTCTGTTTCAAAGGCT 14583 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || ||||| ||||| ||||||||||||||||| ||| | |||||||| |||||||| || Sbjct 14582 GTTATTACGGTTCCGGCTTATTTCAATGATGCCCAAAGACAAGCAACAAAAGATGCTGGC 14523 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCT 451440 ||||| || | |||| | | ||||| ||||| || || || ||||| || Sbjct 14522 AGAATTGCAGGCCTTGATGTGCAGAGGATTATCAATGAGCCAACTGCTGCTGCCCT 14467 >seq167 Length=274983 Score = 86.0 bits (94), Expect = 2e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 450917 ATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTA 450976 ||||| |||||||||||||| || | ||| ||||| || || ||| |||| || | || Sbjct 160882 ATTGGTATTGATCTTGGAACTACTTATTCTTGTGTTGGAGTCTACAAAAACGGTCACGTT 160941 Query 450977 GAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGT 451023 ||||| ||||| || ||||||||| || | ||| || |||||||| Sbjct 160942 GAAATCATAGCCAACGACCAAGGAAACCGTATTACCCCATCATGGGT 160988 >seq56 Length=474593 Score = 84.2 bits (92), Expect = 9e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 451312 AGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAAC 451371 ||| ||| | || || | || || || || || |||||||| | ||| | |||||| Sbjct 373735 AGTGACTAAAGCTGTTGTCACCGTGCCTGCGTACTTCAATGACTCTCAAAGAACAGCAAC 373676 Query 451372 TAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGC 451431 |||||||| || | ||||||||||||| | |||||||| ||||| || ||||| || || Sbjct 373675 AAAAGATGCTGGTCGTATTGCTGGTTTAGAGGTTCTTCGTATTATAAACGAACCAACTGC 373616 Query 451432 AGCT 451435 ||| Sbjct 373615 TGCT 373612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975009737593460