Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq113 116 5e-21 seq143 114 2e-20 seq1347 100 4e-16 >seq113 Length=343576 Score = 116 bits (128), Expect = 5e-21 Identities = 199/283 (70%), Gaps = 12/283 (4%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| || |||||||| ||||| |||||||||||||| || || | ||||||||| || Sbjct 221179 AAACCCGTCCATCTCCGTCAAGAGCTGGTTAATAGTCTGCTCTCTCTCATCATTCCCT-- 221122 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | | | ||||| | | ||| | || ||||||||||||||||||||||| || || Sbjct 221121 CCTCCAAGCCCAGCTCCTCTCTGCCTCCCAACGGCATCAATCTCATCAATGAACACAATA 221062 Query 16092 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCC--AC 16147 || || ||||| || || || || | ||||| ||| || | ||||| || Sbjct 221061 CACGG--CGCTTTCGACTTCGCCTTCTCGAACAAATCCC--TCACTCTCGACGCCCCAAC 221006 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 16207 || ||||||| |||||| || | | || | ||| || ||| || || || ||| Sbjct 221005 TCCCACAAACAACTCCACGAACTCCGAAGCCGCACACGAGAAGAACGGCACTCCAGCTTC 220946 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 16250 || || | ||| ||||| | ||| ||||| || ||||| ||| Sbjct 220945 TCCGGCCACGGCCCGGGCCAAAAGGGTCTTCCCGGTACCGGGC 220903 >seq143 Length=298601 Score = 114 bits (126), Expect = 2e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 ||||| || ||||| ||| |||| || || || || || || ||||||||||| || | Sbjct 58047 TCCTTCGCCGAGCGCCTCATCGCCTTCGCCTGCGTCGAAGGGATCTTCTTCTCCGGAAGC 58106 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 |||||||| || | ||||| |||||||| || | ||||| || ||| |||||||||| Sbjct 58107 TTCTGCGCCATCTTCTGGCTAAAGAAGCGCGGGTTGATGCCGGGACTCACCTTCTCCAAC 58166 Query 102291 GAGCTTATCTCTCGTGACGAGGG 102313 ||| | ||||| || |||||||| Sbjct 58167 GAGTTGATCTCGCGAGACGAGGG 58189 >seq1347 Length=37354 Score = 100 bits (110), Expect = 4e-16 Identities = 269/404 (67%), Gaps = 12/404 (3%) Strand=Plus/Plus Query 15936 TTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCA 15993 || || || || || |||| ||||| |||| | || ||||||| ||||| ||||| | Sbjct 26532 TTAGTCGCAGCAATAACAATGATACCAGTGTTACCTT--CAAAACCGTCCATTTCTGTTA 26589 Query 15994 AAAGCTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTGGC-ATACCACCAGCACTGC 16050 |||||||||||| || ||||| | |||||| || | | | ||||| | | || Sbjct 26590 AAAGCTGGTTAAGGGTCTGTTCTCTTTCATCGTTTCCACCACCAATACCGGTACCTCTCT 26649 Query 16051 GTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAG 16110 || | ||| || |||||||| ||||||| || || ||||| || ||| || || Sbjct 26650 GTCG---TCCAACAGCATCAATTTCATCAACAAACACAATGCAAGGCGCATTCTCCTTAG 26706 Query 16111 CGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGT 16170 | || || ||||| || || || || || || ||||||||||| || ||||| | Sbjct 26707 CCTTTTTGAAAAGATCACGCACTCGAGAAGCACCAACTCCAACAAACATTTCAACAAACT 26766 Query 16171 TTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGA 16229 | | | | || | || || || ||| || |||||| ||||| || ||| || Sbjct 26767 CAGAACCTG-AGATAGAGAAAAATGGAACACCAGCTTCACCAGCAATTGCCTTGGCTAGC 26825 Query 16230 AGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA 16289 || ||||| || || || || ||| | || || | || ||||| || ||| Sbjct 26826 AGGGTCTTTCCAGTCCCAGGAGGACCAACAAGAAGAACTCCCTTAGGAATACGAGCCCCA 26885 Query 16290 CTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTC 16333 || || | | ||||| |||| ||| | ||| ||||| | ||| Sbjct 26886 ATTGCAGTGAACCTCTCGGGTTTCTTCAAAAACTCCACCACCTC 26929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620525178956400