Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq113 111 2e-19 seq1347 102 1e-16 seq143 91.5 2e-13 seq8 86.0 7e-12 >seq113 Length=343576 Score = 111 bits (122), Expect = 2e-19 Identities = 258/382 (68%), Gaps = 8/382 (2%) Strand=Plus/Minus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| || |||||||| ||||| || ||||||||||| || || | ||||||||| || Sbjct 221179 AAACCCGTCCATCTCCGTCAAGAGCTGGTTAATAGTCTGCTCTCTCTCATCATTCCCT-- 221122 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | | | ||||| | | ||| | || ||||||||||||||||||||||| |||||| Sbjct 221121 CCTCCAAGCCCAGCTCCTCTCTGCCTCCCAACGGCATCAATCTCATCAATGAACACAATA 221062 Query 9399 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACC 9457 || || | ||| | || | || || | ||| | || || || || || || Sbjct 221061 CACGG-CGCTTTCGACTTCGCCTTCTCGAACAAATCCCTCACTCTCGACGCCCCAACTCC 221003 Query 9458 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9517 ||||||| |||||| || | | || | ||| || ||| || || || ||| || Sbjct 221002 CACAAACAACTCCACGAACTCCGAAGCCGCACACGAGAAGAACGGCACTCCAGCTTCTCC 220943 Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9577 || | ||| ||||| | ||| ||||| || ||||| ||| ||| | | || | |||| Sbjct 220942 GGCCACGGCCCGGGCCAAAAGGGTCTTCCCGGTACCGGGCGGGCCCAC-AAGAAGACACC 220884 Query 9578 CCGT-GGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAA 9636 | | || || || || || | ||| | || || | ||| | |||||||||| Sbjct 220883 CTTTGGGGATTTTAGCTCCCAGAGCCGTGTACTTATCCGGGTTCTTCAAGAAATCCACAA 220824 Query 9637 TCTCTTCCAATTCATCTTTGGC 9658 |||| |||||| ||||| Sbjct 220823 CTTCTTGTAATTCAAGCTTGGC 220802 >seq1347 Length=37354 Score = 102 bits (112), Expect = 1e-16 Identities = 267/402 (66%), Gaps = 8/402 (2%) Strand=Plus/Plus Query 9243 TTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAA 9302 || ||||| || || |||| ||||| || | | |||||||| ||||| ||||| ||| Sbjct 26532 TTAGTCGCAGCAATAACAATGATACCAGTGTTACCTTCAAAACCGTCCATTTCTGTTAAA 26591 Query 9303 AGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTGGCA-TACCACCAGCACTGCGT 9359 || ||||||| || ||||| | |||||| || | | || |||| | | || || Sbjct 26592 AGCTGGTTAAGGGTCTGTTCTCTTTCATCGTTTCCACCACCAATACCGGTACCTCTCTGT 26651 Query 9360 TGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCG 9419 | ||| || |||||||| ||||||| || ||||| || || ||| || || Sbjct 26652 CG---TCCAACAGCATCAATTTCATCAACAAACACAATGCAAGGCGCATTCTCCTTAGCC 26708 Query 9420 ATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTT 9479 ||| || ||||| || || | || || || ||||||||||| || ||||| | Sbjct 26709 TTTTTGAAAAGATCACGCACTCGAGAAGCACCAACTCCAACAAACATTTCAACAAACTCA 26768 Query 9480 GCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAG 9538 | | | | || | || || || ||| || |||||| ||||| || ||| || || Sbjct 26769 GAACCTG-AGATAGAGAAAAATGGAACACCAGCTTCACCAGCAATTGCCTTGGCTAGCAG 26827 Query 9539 AGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACT 9598 ||||| || || || || ||| | || || | ||| ||||| || ||| | Sbjct 26828 GGTCTTTCCAGTCCCAGGAGGACCAACAAGAAGAACTCCCTTAGGAATACGAGCCCCAAT 26887 Query 9599 TCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 | || | | ||||| |||| ||| | ||| ||||| | ||| Sbjct 26888 TGCAGTGAACCTCTCGGGTTTCTTCAAAAACTCCACCACCTC 26929 >seq143 Length=298601 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 ||||| ||||| || || | || || |||||| || || ||||| | || |||||| Sbjct 58189 CCCTCGTCTCGCGAGATCAACTCGTTGGAGAAGGTGAGTCCCGGCATCAACCCGCGCTTC 58130 Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 || | ||| | || |||||||| |||||||||||||| || || || || || || Sbjct 58129 TTTAGCCAGAAGATGGCGCAGAAGCTTCCGGAGAAGAAGATCCCTTCGACGCAGGCGAAG 58070 Query 117412 GCAAAAAGGCGCTCGGCGAAGGA 117434 || | ||||||||||||||||| Sbjct 58069 GCGATGAGGCGCTCGGCGAAGGA 58047 >seq8 Length=1027367 Score = 86.0 bits (94), Expect = 7e-12 Identities = 112/151 (74%), Gaps = 3/151 (2%) Strand=Plus/Plus Query 106446 TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCT- 106504 ||||| | |||| | ||| || || |||| |||||| ||||| || || | | || Sbjct 604726 TGACAAATCTTGGCAAGGCAATAGAAGCCAGATTGCACACAGCGGTTTC-TGTTGGACTA 604784 Query 106505 GTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 106564 |||||||| | || || ||||||||||| ||| |||||||| |||| ||||| |||| Sbjct 604785 GTGTACTCAATTATCTCAGTACACAAGTTTGAAGATTTAATCGTACCCAGATTCTGTTGG 604844 Query 106565 TTACTCTTTTTGTTGCACGCATCCTTGTAGA 106595 ||||| || | ||||| | ||||| |||| Sbjct 604845 TTACTTTTCCTATTGCAAGTGTCCTT-TAGA 604874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589774343593800