Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq1 228 1e-54 seq257 156 5e-33 seq168 109 7e-19 seq272 107 2e-18 seq964 89.7 6e-13 >seq1 Length=1764766 Score = 228 bits (252), Expect = 1e-54 Identities = 258/346 (75%), Gaps = 0/346 (0%) Strand=Plus/Minus Query 182091 CAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTCTCAGATCT 182150 ||||||||| |||||||| |||||||||||||| || |||||||| ||||| || |||| Sbjct 983302 CAACTCAAGCTGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATCT 983243 Query 182151 TCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTA 182210 | || |||| ||| |||||| | ||||| |||||||||||| | ||||| || || | Sbjct 983242 TTGGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAA 983183 Query 182211 TGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATG 182270 ||| | |||| ||| | | || | | ||||| ||| | || || ||||| |||| Sbjct 983182 CTGGTTTATGGATGAGTGCTTTTGGAGTAGTCGGTCTGGCTTTGAATCTACGTGCCTATG 983123 Query 182271 ACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACGTTCTACACAA 182330 |||| || || ||||||||| | ||| | ||||| || || || ||||| | |||||| | Sbjct 983122 ACTTCGTTTCTCAAGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTGCTACACCA 983063 Query 182331 AGAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCGATCAACCACATG 182390 | || |||||||| || || ||| | ||||| ||| | || | ||||| || |||| Sbjct 983062 AAAATATTCTCTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATG 983003 Query 182391 AGAACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACT 182436 | |||||| | ||||||||||| || || | | || ||||| || Sbjct 983002 AAAACTTTATATTCCCTGAGGAGGTTCTATCTCGTGGAAACGCTCT 982957 >seq257 Length=213233 Score = 156 bits (172), Expect = 5e-33 Identities = 247/352 (70%), Gaps = 4/352 (1%) Strand=Plus/Minus Query 181805 AATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCGTCTCTGTATTTCTCATCTATCCT 181864 ||||| || || || |||| ||| |||| ||| || || |||||||| || || ||||| Sbjct 14485 AATGCAATCGCATTCTCCGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTGATTTATCCA 14426 Query 181865 CTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGGTGTCGCGGCGATTTTCCGCTTC 181924 || || | ||||||||||||| || | ||| ||||| || || || || || ||| Sbjct 14425 TAAGGTCAGTTTGGTTGGTTCTTTGCACCCAATTTTGGTGTAGCAGCTATATTTCGATTC 14366 Query 181925 CTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGTGTT 181984 | || || |||| || ||| |||||||||| | || | || || |||||||| ||| Sbjct 14365 ATCCTATTTTTCCAAGGGTTTTATAATTGGACATTGAACTCATTTCACATGATGGGAGTT 14306 Query 181985 GCTG--GTATCCTGGGTGGCGCATTACTCTCTGCAATTCACGGTGTGACCGTGGAGAATA 182042 || | |||| |||||| || | || | ||| ||||| | ||| | || |||| Sbjct 14305 GCCGAGGTAT--TGGGTGCTGCTATGCTATGTGCTATTCATGACACTACCATAGAAAATA 14248 Query 182043 CTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAGCATTCGATTCAACTCAAGAAG 182102 | | | | |||| | ||| | |||||| ||| | || | |||||||| | Sbjct 14247 CCTTATTTGAAGATGATGATGGTGTAAATACATTCCCTACTTTTAACCCAACTCAAACTG 14188 Query 182103 AAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTCTCAGATCTTCGG 182154 || |||| |||||||||||||| || ||| |||| ||||| || ||||| || Sbjct 14187 AATAAACTTATTCAATGGTTACCGCTAACTGCTTTTGGTCCCAAATCTTTGG 14136 >seq168 Length=274740 Score = 109 bits (120), Expect = 7e-19 Identities = 145/200 (73%), Gaps = 1/200 (1%) Strand=Plus/Plus Query 180536 TGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGG 180595 ||| || || || ||||| ||| | | || | |||| |||||| || ||| | || || Sbjct 245234 TGTAGTAGGTATTTGGTTTACT-CTTTAGGTATTAGCATCATGGCTTTTAACTTAAATGG 245292 Query 180596 TTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTGCTCAACACTTGGGCAGA 180655 ||| || ||||| || | | ||||| || |||||||||| | || || | || | Sbjct 245293 TTTTAATTTCAATCAATTTGTAGTTGATAGTTAAGGTCGTGTAATTAATACCTAGGTTAA 245352 Query 180656 CGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTT 180715 | | ||||| ||| ||| ||||||||||||||||| || ||||||||||| ||||| Sbjct 245353 TATCATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTT 245412 Query 180716 CCCACTTGACCTGGCAGCTG 180735 | | || ||||| || |||| Sbjct 245413 CTCTCTAGACCTAGCGGCTG 245432 >seq272 Length=206342 Score = 107 bits (118), Expect = 2e-18 Identities = 292/443 (66%), Gaps = 12/443 (3%) Strand=Plus/Minus Query 181640 CATTCTCTTCTTCTACTTTGGGGTCCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAA 181699 |||||| | | |||| |||| ||||||||| || ||||||| || ||| ||| Sbjct 147073 CATTCTTTAATGTTACTATGGGATCCTGAAGCACAATGCGATTTTACTCGTTGGTGTCAA 147014 Query 181700 CTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATG 181759 | | || || ||| ||||||| | || || || ||| || || ||||||| Sbjct 147013 ATAAGTGGTCTGTGGACTTTTGTTGTTCTTCATGGCATTTTCAAACTAATAGGTTTTACA 146954 Query 181760 CTCAGGCAATTTGAACTTGCTCG-TCTAATCGGAATCCGACCCT----ACAATGCGATTG 181814 | | ||||||||||||||||| ||| || ||| | ||| | | | || Sbjct 146953 TTACGTCAATTTGAACTTGCTCGATCTGTTC--AATTGTATCCTTATAATATTATAATCA 146896 Query 181815 CTTTTTCCGGTCCTATTGCTGTATTCGTCTCTGTATTTCTCATCTATCCTCTGGGACAAT 181874 | || |||| ||| |||| ||| || | |||||||| | || ||||| | | || | Sbjct 146895 CATTCTCCGCTCCAATTGTTGTTTTTGGTTCTGTATTCTTGATTTATCCGTTAGTTCAGT 146836 Query 181875 CCAGTTGGTTCTTTGCGCCGAGTTTCGGTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCC 181934 | ||||| ||| | || ||||| | || | || || || || || ||||| Sbjct 146835 C----TGGTTTTTTACACCCAGTTTTAGCGTAGTAGCTATATTACGATTTACCCTCTTTT 146780 Query 181935 TCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGTGTTGCTGGTATCC 181994 |||| || ||||||||||||| | || || || || |||||||| |||||||| | Sbjct 146779 TCCAAGGGTTTCATAATTGGAAATTTAACCCATTTCACATGATGGGAGTTGCTGGGGT-A 146721 Query 181995 TGGGTGGCGCATTACTCTCTGCAATTCACGGTGTGACCGTGGAGAATACTCTGTATCAAG 182054 | ||| ||| | || | ||| || || || | | ||| || |||||| | | | ||| Sbjct 146720 TTAGTGTTGCACTGCTATGTGCTATCCATGGCGCTATCGTAGACAATACTTTATTTGAAG 146661 Query 182055 ACGGTGACCAAGCAAATACTTTC 182077 | ||||| | |||||| ||| Sbjct 146660 ATGGTGATGGTGTAAATACATTC 146638 >seq964 Length=67008 Score = 89.7 bits (98), Expect = 6e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 182130 ACCGCTTCTGGTCTCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCT 182189 ||||||| ||||| || ||||| || ||| ||| |||||| | ||||| ||||||| Sbjct 23419 ACCGCTTTTGGTCCCAAATCTTTGGGGTTGTTTTTTCCAATAAACGTTGGTTACATTTCT 23478 Query 182190 TTATGCTCTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTG 182249 ||||| | ||| | || || | ||| | | || ||| | | || | | ||||| | Sbjct 23479 TTATGTTATTTATACCAGTAACTGGTTTATAGATGAGTGCTCTTGGAGTAGTCGGTCTGG 23538 Query 182250 CTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAG 182309 || | || | ||||| |||||||| || || ||||||||| || | ||||| || | Sbjct 23539 CTTTGAATTTACGTGCCTATGACTTCGTTTCTCAAGAAATCCATTCAGCGGAAGATCCTG 23598 Query 182310 AGTTCGAGA 182318 | || |||| Sbjct 23599 AATTTGAGA 23607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610183199269800