Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq716 152 6e-32 seq1 143 3e-29 seq257 100 3e-16 seq269 87.8 2e-12 >seq716 Length=92840 Score = 152 bits (168), Expect = 6e-32 Identities = 201/279 (72%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 169863 TGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCA 169922 ||||||||| ||||| ||||| ||||||||||||||||| | || || ||||| ||||| Sbjct 34196 TGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTTCAAGCTGAGCA 34137 Query 169923 TAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTT 169982 | || || ||||| || || | ||| ||| ||||| || | ||||| || || | Sbjct 34136 CTATATCCTTATGCACCCATTTCTTATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCT 34077 Query 169983 ATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAGCA 170042 |||| || || |||||||| | || || || | | || || |||| ||||| | Sbjct 34076 ATTCAGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTGATAAGGAAAACCACAGAAAA 34017 Query 170043 AGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGC 170102 || || || | ||||| | ||||| ||||| |||||||| || || || ||||| Sbjct 34016 TGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGC 33957 Query 170103 AGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGC 170141 || || ||||| ||||| || | |||||||| ||||| Sbjct 33956 CGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGC 33918 >seq1 Length=1764766 Score = 143 bits (158), Expect = 3e-29 Identities = 246/357 (69%), Gaps = 0/357 (0%) Strand=Plus/Minus Query 171210 TTTGATCCTACACAGGAAGAAGAAACTTACAGTATGATTACAGCAAACAGATTCTGGTCA 171269 ||| | || || || | ||||||||||| ||| |||| || ||| | || ||||| Sbjct 983309 TTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCC 983250 Query 171270 CAGATATTTGGTATTGCTTTCTCTAACAAAAGATTTTTACACTTCCTTATGTTGTTCGTT 171329 || || ||||| ||||||| || || ||| | | ||||| ||| ||||||| || || Sbjct 983249 CAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTA 983190 Query 171330 CCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTAGCACTTAACCTCAGA 171389 || || | ||| | |||| || | || | || ||||| || | || || | Sbjct 983189 CCAGTAACTGGTTTATGGATGAGTGCTTTTGGAGTAGTCGGTCTGGCTTTGAATCTACGT 983130 Query 171390 GCATACGATTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTCGAGACTTTC 171449 || || || || || |||||||| || | ||||| ||||| || || || ||||||| | Sbjct 983129 GCCTATGACTTCGTTTCTCAAGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTGC 983070 Query 171450 TACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCATGGATGTCATCAGTTGACCAA 171509 ||||| || ||||| || | || || ||||| | || |||||| | | || || Sbjct 983069 TACACCAAAAATATTCTCTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAG 983010 Query 171510 CCACATGAGAACTTCGTATTCCCAGAAGAAGTGTTACCAAGAGGTAACGCACTTTAA 171566 || ||||| ||||| ||||||| || || || || | | || ||||| |||||| Sbjct 983009 CCTCATGAAAACTTTATATTCCCTGAGGAGGTTCTATCTCGTGGAAACGCTCTTTAA 982953 >seq257 Length=213233 Score = 100 bits (110), Expect = 3e-16 Identities = 127/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 170955 TTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCATTCGGTGTCGCA 171014 || ||||| |||||| ||||||| |||||||||| ||||| || ||||| ||| Sbjct 14440 TTCCTGATTTATCCATAAGGTCAGTTTGGTTGGTTCTTTGCACCCAATTTTGGTGTAGCA 14381 Query 171015 GCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAATCCATTT 171074 || || ||||| | ||| |||| | ||||| || | || |||||||| ||||| Sbjct 14380 GCTATATTTCGATTCATCCTATTTTTCCAAGGGTTTTATAATTGGACATTGAACTCATTT 14321 Query 171075 CACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCATTCATG 171129 ||||||||||| ||||| | || | |||| || | ||||||| ||||||| Sbjct 14320 CACATGATGGGAGTTGCCGAGGTATTGGGTGCTGCTATGCTATGTGCTATTCATG 14266 >seq269 Length=207462 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/200 (70%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 170531 TGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGTCT 170590 |||| || | || || |||||| ||| || ||||| || || |||| ||||| ||||| Sbjct 67670 TGATATTATGGATGATTGGTTATGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCT 67611 Query 170591 TTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTCGT 170650 || || | |||||||| || | | | || ||||||||| ||| || ||| || Sbjct 67610 ATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGAGGTTGGTTCGCAGGTACAGTCTTTGT 67551 Query 170651 TACATCATGGTATA--CACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTA 170708 || |||||||||| | ||||| | || || ||| | || ||||| |||||| | Sbjct 67550 AACTTCATGGTATACTCTCATGGATTAGCAAGTTCCTATTTGGAAGGATGCAACTTCTTG 67491 Query 170709 ACAGCAGCAGTTTCCACACC 170728 | || |||||||| || || Sbjct 67490 CCTGCCGCAGTTTCTACTCC 67471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579010111720800