Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq1 208 9e-49 seq716 167 3e-36 seq257 140 4e-28 seq272 136 5e-27 seq1194 116 4e-21 seq2 98.7 1e-15 seq168 95.1 1e-14 >seq1 Length=1764766 Score = 208 bits (230), Expect = 9e-49 Identities = 247/335 (74%), Gaps = 0/335 (0%) Strand=Plus/Minus Query 169985 GAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCG 170044 ||||| |||||||| ||||| || || |||||||| ||||| || ||||| || |||| Sbjct 983291 GAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCT 983232 Query 170045 TTTTCTAACAAGCGTTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGG 170104 ||||| || || ||||| | ||||| || ||||| ||||| || || | ||| | ||| Sbjct 983231 TTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGG 983172 Query 170105 ACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGT 170164 | || |||| | | || || ||| | ||||| ||||| || || ||||| | Sbjct 983171 ATGAGTGCTTTTGGAGTAGTCGGTCTGGCTTTGAATCTACGTGCCTATGACTTCGTTTCT 983112 Query 170165 CAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTA 170224 || || ||| | ||||| |||||||| ||||||||||| | |||||||||||| || || Sbjct 983111 CAAGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTGCTACACCAAAAATATTCTC 983052 Query 170225 TTGAATGAAGGACTTCGTGCATGGTTGGCACCTGCTGATCAACCACATGAAAACTTCATC 170284 || || || || ||||||| ||| |||| || ||||| || ||||||||||| || Sbjct 983051 TTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACTTTATA 982992 Query 170285 TTCCCAGAAGAAGTTCTTCCGAGAGGTAACGCACT 170319 ||||| || || ||||| | | || ||||| || Sbjct 982991 TTCCCTGAGGAGGTTCTATCTCGTGGAAACGCTCT 982957 >seq716 Length=92840 Score = 167 bits (184), Expect = 3e-36 Identities = 202/275 (73%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 168328 ATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAAT 168387 ||||| || |||||||| | || ||||||| ||| | || || |||||||||||| || Sbjct 34192 ATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTTCAAGCTGAGCACTAT 34133 Query 168388 ATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTT 168447 || || ||||| || || | |||| | || || ||||| ||||| || ||| | || Sbjct 34132 ATCCTTATGCACCCATTTCTTATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTC 34073 Query 168448 AGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAA 168507 |||||||| || || ||||| || ||| | | | || | || || |||| ||| Sbjct 34072 AGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTGATAAGGAAAACCACAGAAAATGAA 34013 Query 168508 TCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCT 168567 || || | ||||||| ||||| ||||| |||||||| || || || ||||||||| Sbjct 34012 TCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGCCGCT 33953 Query 168568 CATGGTTACTTCGGTCGTTTGATCTTCCAATACGC 168602 |||||||| || || || |||||||||||||| || Sbjct 33952 CATGGTTATTTTGGCCGATTGATCTTCCAATATGC 33918 >seq257 Length=213233 Score = 140 bits (154), Expect = 4e-28 Identities = 242/352 (69%), Gaps = 0/352 (0%) Strand=Plus/Minus Query 169686 ATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTTGTCAGTGTCTTTCTTATCTACC 169745 ||||||| || |||||||| | ||| |||| ||| ||||| ||| || || || || | Sbjct 14487 ATAATGCAATCGCATTCTCCGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTGATTTATC 14428 Query 169746 CACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTTTGGAGTATCAGCAATCTTCAGGT 169805 || || |||| ||||||||||| ||| ||||| ||| |||| || || | | Sbjct 14427 CATAAGGTCAGTTTGGTTGGTTCTTTGCACCCAATTTTGGTGTAGCAGCTATATTTCGAT 14368 Query 169806 TCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTTGAATCCATTCCACATGATGGGTG 169865 || | | || | ||||| || | || ||||| ||||| |||| ||||||||||| | Sbjct 14367 TCATCCTATTTTTCCAAGGGTTTTATAATTGGACATTGAACTCATTTCACATGATGGGAG 14308 Query 169866 TAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGCTATCCATGGTGTTACAGTAGAGAACA 169925 | || | | ||||| | || |||| | |||||| |||| ||| |||| || | Sbjct 14307 TTGCCGAGGTATTGGGTGCTGCTATGCTATGTGCTATTCATGACACTACCATAGAAAATA 14248 Query 169926 CATTGTATGAAGACGGTGAGCAGGCAAATACTTTCAAGGCGTTTGATTCGACACAGGAAG 169985 | || | |||||| | ||| | |||||| ||| | ||| | | || || | Sbjct 14247 CCTTATTTGAAGATGATGATGGTGTAAATACATTCCCTACTTTTAACCCAACTCAAACTG 14188 Query 169986 AAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGG 170037 || | |||||||| ||||| || || ||| |||| ||||| || ||||| || Sbjct 14187 AATAAACTTATTCAATGGTTACCGCTAACTGCTTTTGGTCCCAAATCTTTGG 14136 >seq272 Length=206342 Score = 136 bits (150), Expect = 5e-27 Identities = 294/434 (68%), Gaps = 18/434 (4%) Strand=Plus/Minus Query 169535 TTGCTATGGGGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTC 169594 || ||||||| ||| ||||||||| ||||||| ||| ||||||||| | ||||||| Sbjct 147061 TTACTATGGGATCCTGAAGCACAATGCGATTTTACTCGTTGGTGTCAAATAAGTGGTCTG 147002 Query 169595 TGGAACTTTGTAGCACTTCATGGTGCATTTGCAT--TGATTGGTTTCATGCTTAGGCAGT 169652 |||| ||||| | |||||||| ||||| || | || ||||| | | | || | Sbjct 147001 TGGACTTTTGTTGTTCTTCATGG--CATTTTCAAACTAATAGGTTTTACATTACGTCAAT 146944 Query 169653 TTGAATTGGCACGTCTTATTGGCATCCGTCCTTATAATGCTATTG---CATTCTCTGGTC 169709 ||||| | || || | || | |||||||||| ||| ||||||| | || Sbjct 146943 TTGAACTTGCTCGATCTGTTCAATTGTATCCTTATAATATTATAATCACATTCTCCGCTC 146884 Query 169710 CTATTGCTGTATTTGTCAGTGTCTTTCTTATCTACCCACTTGGACAGTCCTCATGGTTCT 169769 | |||| ||| |||| ||| || | || || || | | ||||| ||||| | Sbjct 146883 CAATTGTTGTTTTTGGTTCTGTATTCTTGATTTATCCGTTAGTTCAGTC----TGGTTTT 146828 Query 169770 TTGCTCCCTCCTTTGGAGTATCAGCAATCTTCAGGTT---CCTGTTGTTCCTGCAAGGAT 169826 || | ||| ||| | ||| ||| || || | || ||| || |||| |||| | Sbjct 146827 TTACACCCAGTTTTAGCGTAGTAGCTATATTACGATTTACCCTCTTTTTCC---AAGGGT 146771 Query 169827 TCCACAACTGGACGTTGAATCCATTCCACATGATGGGTGTAGCAGGAATCTTGGGCGGAG 169886 | || || |||| || || ||||| ||||||||||| || || || | || | | | Sbjct 146770 TTCATAATTGGAAATTTAACCCATTTCACATGATGGGAGTTGCTGGGGTATTAGT-GTTG 146712 Query 169887 CATTGCTTTCTGCTATCCATGGTGTTACAGTAGAGAACACATTGTATGAAGACGGTGAGC 169946 || |||| | |||||||||||| | || ||||| || || || | |||||| ||||| Sbjct 146711 CACTGCTATGTGCTATCCATGGCGCTATCGTAGACAATACTTTATTTGAAGATGGTGATG 146652 Query 169947 AGGCAAATACTTTC 169960 | |||||| ||| Sbjct 146651 GTGTAAATACATTC 146638 >seq1194 Length=46772 Score = 116 bits (128), Expect = 4e-21 Identities = 203/294 (69%), Gaps = 6/294 (2%) Strand=Plus/Minus Query 169337 GACCGCTTTGTATTCATTGGTTGGTCTGGTCTACTTCTTCTTCCCACTGCCTATCTTGCT 169396 ||||| || || || | | |||||| |||||| | || || ||||||| | || Sbjct 21569 GACCGTTTCGTTTTTGTAGATTGGTCCGGTCTATTGCTATTTTTTTGTGCCTATTTCACT 21510 Query 169397 ATTGGAGGGTGGCTCACTGGTACAGCGTTTGTTACTTCCTGGTACACCCACGGACTCGC- 169455 | ||||| ||| ||| |||| | | ||||| ||||| || || || || ||| | || Sbjct 21509 TTAGGAGGTTGGTTCATAGGTATAACCTTTGTAACTTCATGCTATACTCATGGATTAGCA 21450 Query 169456 --TTCCAGTTACTTAGAAGGCGCTAACTTCCTCACTGCTGCTGTCAGTACACCTGCTGAC 169513 |||| || || ||| |||||| | ||||| | || || || | | | Sbjct 21449 AGTTCC---TATTTGGAATAATACAACTTCTTAACTGCCGTAGTTTCGACTCCCGTTAAT 21393 Query 169514 GCTATGGGACACTCACTGCTCTTGCTATGGGGTCCAGAAGCACAAGGCGATTTCGTTCGC 169573 | | | |||||| || | | ||| ||||||| ||||||||||||||||| || Sbjct 21392 AGTTTTGCACACTCTTTGTTGCTACTAGGGGGTCCTGAAGCACAAGGCGATTTTACTCAT 21333 Query 169574 TGGTGTCAATTGGGTGGTCTCTGGAACTTTGTAGCACTTCATGGTGCATTTGCA 169627 ||||||||||| |||||||| |||| ||||| ||||| || ||||| |||||| Sbjct 21332 TGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCACTCCACGGTGCTTTTGCA 21279 >seq2 Length=1456787 Score = 98.7 bits (108), Expect = 1e-15 Identities = 106/141 (75%), Gaps = 7/141 (5%) Strand=Plus/Plus Query 168540 AGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATA 168599 ||||||||| || || || ||||| ||||||||||| || || || ||||| |||||||| Sbjct 1455406 AGAAGAAACCTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATATTCCAATA 1455465 Query 168600 CGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGG 168659 ||| ||| | || || || ||||||||| | ||||| |||||||| || || Sbjct 1455466 TGCTAGTTTC-------CTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTGGG 1455518 Query 168660 CATCTGGTTCACCGCCCTTGG 168680 || ||||| ||||| |||| Sbjct 1455519 TATTTGGTTTACCGCTTTTGG 1455539 >seq168 Length=274740 Score = 95.1 bits (104), Expect = 1e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 168691 ATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGT 168750 ||||| || ||| | || ||||| || ||||| || | | ||||| || | |||||| Sbjct 245273 ATGGCTTTTAACTTAAATGGTTTTAATTTCAATCAATTTGTAGTTGATAGTTAAGGTCGT 245332 Query 168751 GTGTTGAACACCTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTATGCAT 168810 || | || |||| || || | | ||||| ||| ||| |||||||||||||||||| Sbjct 245333 GTAATTAATACCTAGGTTAATATCATTAACCGTGCTAATCTTGGTATGGAAGTTATGCAT 245392 Query 168811 GAGCGTAACGCACACAACTTCCCACTCGATCTTGCTGCTG 168850 || ||||| || || |||||| | || || || || |||| Sbjct 245393 GAACGTAATGCTCATAACTTCTCTCTAGACCTAGCGGCTG 245432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574272570144600