Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq1 237 2e-57 seq716 190 2e-43 seq257 161 1e-34 seq272 131 2e-25 seq1194 98.7 1e-15 seq269 91.5 2e-13 seq168 87.8 2e-12 seq139 84.2 2e-11 >seq1 Length=1764766 Score = 237 bits (262), Expect = 2e-57 Identities = 265/354 (75%), Gaps = 0/354 (0%) Strand=Plus/Minus Query 165853 ATTTGACTCTACTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTC 165912 |||| || | ||||||| |||||||| || ||||||||||| || ||||| || ||||| Sbjct 983310 ATTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTC 983251 Query 165913 TCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGT 165972 || ||||| || |||| ||| ||||| | ||||| |||||||||||| | ||||| Sbjct 983250 CCAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGT 983191 Query 165973 TCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCG 166032 || || | ||| | |||| ||| | | || | | ||||| ||| | || || || Sbjct 983190 ACCAGTAACTGGTTTATGGATGAGTGCTTTTGGAGTAGTCGGTCTGGCTTTGAATCTACG 983131 Query 166033 TGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGACCCAGAGTTTGAAACCTT 166092 ||| |||||||| || || ||||| ||| | ||||| ||||| || || ||||| || | Sbjct 983130 TGCCTATGACTTCGTTTCTCAAGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTG 983071 Query 166093 CTACACGAAAAACATTCTCTTGAATGAAGGTCTTCGTGCTTGGTTGGCACCAGTCGATCA 166152 |||||| ||||| |||||||| || || ||| ||||||||||| |||| | ||||| Sbjct 983070 CTACACCAAAAATATTCTCTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCA 983011 Query 166153 ACCGCATGAGAACTTTGTCTTCCCTGAAGAAGTTCTGCCTAGGGGTAACGCGCT 166206 || ||||| |||||| | |||||||| || ||||| || | || ||||| || Sbjct 983010 GCCTCATGAAAACTTTATATTCCCTGAGGAGGTTCTATCTCGTGGAAACGCTCT 982957 >seq716 Length=92840 Score = 190 bits (210), Expect = 2e-43 Identities = 207/275 (75%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 164250 ATGCCCCTGGGCATCTCTGGCACCTTCAACTACATGTTGGTGTTCCAAGCAGAGCACAAC 164309 ||||| || || |||||| | || ||||||| ||| | || || ||||| |||||| | Sbjct 34192 ATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTTCAAGCTGAGCACTAT 34133 Query 164310 ATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTTGGCGGTTCTCTGTTC 164369 ||||| |||||||| || | |||| | || || ||||| ||||| ||||| || || ||| Sbjct 34132 ATCCTTATGCACCCATTTCTTATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTC 34073 Query 164370 AGTGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAAACCACCGAAACTGAG 164429 ||||| || || ||||| |||| || ||| || | | ||||||| |||| ||| Sbjct 34072 AGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTGATAAGGAAAACCACAGAAAATGAA 34013 Query 164430 TCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAAACATACAACATTGTTGCCGCT 164489 || || | ||||||| || |||||||| |||||||| || || ||||| |||||| Sbjct 34012 TCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGCCGCT 33953 Query 164490 CACGGTTACTTTGGTCGTCTGATCTTCCAATACGC 164524 || ||||| ||||| || ||||||||||||| || Sbjct 33952 CATGGTTATTTTGGCCGATTGATCTTCCAATATGC 33918 >seq257 Length=213233 Score = 161 bits (178), Expect = 1e-34 Identities = 248/352 (70%), Gaps = 4/352 (1%) Strand=Plus/Minus Query 165575 AATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCT 165634 ||||| || || ||||| | ||| || | |||||||||| || || || || || || Sbjct 14485 AATGCAATCGCATTCTCCGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTGATTTATCCA 14426 Query 165635 CTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAATCTTCAGGTTC 165694 ||||| | ||||||| || || || ||| || || ||||| || || | ||| Sbjct 14425 TAAGGTCAGTTTGGTTGGTTCTTTGCACCCAATTTTGGTGTAGCAGCTATATTTCGATTC 14366 Query 165695 CTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCATATGATGGGTGTT 165754 | || || | ||||| || |||| ||||| ||||| | ||||| |||||||| ||| Sbjct 14365 ATCCTATTTTTCCAAGGGTTTTATAATTGGACATTGAACTCATTTCACATGATGGGAGTT 14306 Query 165755 GC--AGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAATA 165812 || |||||| |||||| ||| |||| | ||| || |||| ||| |||| |||| Sbjct 14305 GCCGAGGTAT--TGGGTGCTGCTATGCTATGTGCTATTCATGACACTACCATAGAAAATA 14248 Query 165813 CTCTGTATCAAGATGGTGACGATGCAAATACTTTCAAGGCATTTGACTCTACTCAAGAGG 165872 | | | | |||||| ||| | || |||||| ||| | ||| || | |||||| | Sbjct 14247 CCTTATTTGAAGATGATGATGGTGTAAATACATTCCCTACTTTTAACCCAACTCAAACTG 14188 Query 165873 AAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTCGG 165924 || |||| || ||||||||||| || ||| | || ||||| || ||||| || Sbjct 14187 AATAAACTTATTCAATGGTTACCGCTAACTGCTTTTGGTCCCAAATCTTTGG 14136 >seq272 Length=206342 Score = 131 bits (144), Expect = 2e-25 Identities = 354/532 (67%), Gaps = 16/532 (3%) Strand=Plus/Minus Query 165325 GTATACTCACGGGTTGGCAAGTTCCTATCTGG-AGGGTGCA---AACTTTCTTA-CTGCG 165379 ||||||||| || || |||||||||||| ||| ||| | | ||| |||||| ||| Sbjct 147162 GTATACTCATGGATTAGCAAGTTCCTATTTGGAAGGATATATGTAAC-TTCTTAGCTGTC 147104 Query 165380 GCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAG 165439 | |||||||||| | | | | | |||||| | || | || |||| |||||| Sbjct 147103 ATAATTTCTACTCCCGTTAATAGTTTAGCACATTCTTTAATGTTACTATGGGATCCTGAA 147044 Query 165440 GCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTC 165499 || ||| | ||||| | ||| ||| | | || || ||| ||||||| | || Sbjct 147043 GCACAATGCGATTTTACTCGTTGGTGTCAAATAAGTGGTCTGTGGACTTTTGTTGTTCTT 146984 Query 165500 CACGGGGCTTTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTGAATTAGCACG-TCTCAT 165558 || || |||| ||||| ||||| | | ||||| |||||| | || || ||| | Sbjct 146983 CATGGCATTTTCAAACTAATAGGTTTTACATTACGTCAATTTGAACTTGCTCGATCTGTT 146924 Query 165559 CGGTATCCGTCCCTACAATGCT---ATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAG 165615 | | | ||| || ||| | || | ||||| | ||| || | |||||||| | Sbjct 146923 CAAT-TGTATCCTTATAATATTATAATCACATTCTCCGCTCCAATTGTTGTTTTTGGTTC 146865 Query 165616 CGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGT 165675 || || | || || || | | ||| || |||||||| | || ||| | || Sbjct 146864 TGTATTCTTGATTTATCCGTTAGTTCAGTC----TGGTTTTTTACACCCAGTTTTAGCGT 146809 Query 165676 CGCAGCAATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCC 165735 | ||| || || | || ||||| | ||||| || ||||| |||| || || || Sbjct 146808 AGTAGCTATATTACGATTTACCCTCTTTTTCCAAGGGTTTCATAATTGGAAATTTAACCC 146749 Query 165736 CTTTCATATGATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGG 165795 ||||| |||||||| ||||| || | | ||| |||| |||| | ||| |||||||| Sbjct 146748 ATTTCACATGATGGGAGTTGCTGGGGT-ATTAGTGTTGCACTGCTATGTGCTATCCATGG 146690 Query 165796 TGTTACAGTAGAGAATACTCTGTATCAAGATGGTGACGATGCAAATACTTTC 165847 | || ||||| |||||| | | | |||||||||| | || |||||| ||| Sbjct 146689 CGCTATCGTAGACAATACTTTATTTGAAGATGGTGATGGTGTAAATACATTC 146638 >seq1194 Length=46772 Score = 98.7 bits (108), Expect = 1e-15 Identities = 198/291 (68%), Gaps = 2/291 (1%) Strand=Plus/Minus Query 165224 GATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCT 165283 || |||||||||||||| | |||||| || || | || ||| ||| ||| | || Sbjct 21569 GACCGTTTCGTTTTTGTAGATTGGTCCGGTCTATTGCTATTTTTTTGTGCCTATTTCACT 21510 Query 165284 ATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGGTATACTCACGGGTTGGCA 165343 | || |||||| | | || | || || | || || |||||||| || || ||| Sbjct 21509 TTAGGAGGTTGGTTCATAGGTATAACCTTTGTAACTTCATGCTATACTCATGGATTAGCA 21450 Query 165344 AGTTCCTATCTGGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGACGCT 165403 ||||||||| |||| ||||| | ||||| | |||||| ||||| | | | Sbjct 21449 AGTTCCTATTTGGAATAATACAACTTCTTAACTGCCGTAGTTTCGACTCCCGTTAATAGT 21390 Query 165404 ATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAAGGGGA-TTTCGTCAGGTG 165462 | | || ||| | |||| || |||||||||| || ||||| || ||| ||| || Sbjct 21389 TTTGCACACTCTTTGTTGCTACTAGGGGGTCCTGAAGCACAAGGCGATTTTACTCA-TTG 21331 Query 165463 GATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGC 165513 | ||| | || || || ||| ||||||| || |||||||| ||||| || Sbjct 21330 GTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCACTCCACGGTGCTTTTGC 21280 >seq269 Length=207462 Score = 91.5 bits (100), Expect = 2e-13 Identities = 128/176 (73%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 165224 GATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCT 165283 || |||||||||||||| |||||||| || || | || ||||| ||| ||| | ||| Sbjct 67642 GACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCT 67583 Query 165284 ATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGGTATACTCAC--GGGTTGG 165341 | || |||||| | | || || || | || |||||||||| | || || | Sbjct 67582 TTAGGAGGTTGGTTCGCAGGTACAGTCTTTGTAACTTCATGGTATACTCTCATGGATTAG 67523 Query 165342 CAAGTTCCTATCTGGAGGG-TGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGC 165396 ||||||||||| |||| || ||||| ||| | |||| |||||||||||||| || Sbjct 67522 CAAGTTCCTATTTGGAAGGATGCAA-CTTCTTGCCTGCCGCAGTTTCTACTCCCGC 67468 >seq168 Length=274740 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/200 (70%), Gaps = 1/200 (1%) Strand=Plus/Plus Query 164573 TGTTGTTGGCATCTGGTTCACCGCACTTGGTGTTTCCACGATGGCATTCAACCTGAACGG 164632 ||| || || || ||||| || | | ||| || || ||||| || ||| | || || Sbjct 245234 TGTAGTAGGTATTTGGTTTACT-CTTTAGGTATTAGCATCATGGCTTTTAACTTAAATGG 245292 Query 164633 TTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGA 164692 ||| || ||||| || | | | ||| || | |||||||| | || || | || | Sbjct 245293 TTTTAATTTCAATCAATTTGTAGTTGATAGTTAAGGTCGTGTAATTAATACCTAGGTTAA 245352 Query 164693 CGTTCTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAACGCTCACAACTT 164752 | | ||||| ||| ||| ||||||||||||||||| || ||||| ||||| ||||| Sbjct 245353 TATCATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTT 245412 Query 164753 CCCTCTGGATCTCGCTGCTG 164772 | |||| || || || |||| Sbjct 245413 CTCTCTAGACCTAGCGGCTG 245432 >seq139 Length=308073 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 164112 TACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTGTT 164171 || |||||||||||||||||||| || || ||| |||||||| ||||||||| |||| Sbjct 89683 TATATGGGTCGTGAGTGGGAACTTAGTTTCCATCTGGGTATGCGCCCTTGGATTGCTGTT 89742 Query 164172 GCTTACTCTGCACCCGTTGCAGCAGC 164197 || || || || || |||||||| || Sbjct 89743 GCATATTCAGCTCCTGTTGCAGCTGC 89768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556729911127800