Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq1 159 4e-34 seq716 143 3e-29 seq269 93.3 5e-14 seq257 89.7 6e-13 seq168 89.7 6e-13 >seq1 Length=1764766 Score = 159 bits (176), Expect = 4e-34 Identities = 250/358 (70%), Gaps = 0/358 (0%) Strand=Plus/Minus Query 173631 ATTTGATCCTACACAGGAAGAAGAAACTTATAGTATGATTACAGCGAACAGATTCTGGTC 173690 |||| | || || || | |||||||||||| ||| |||| || ||| | || ||||| Sbjct 983310 ATTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTC 983251 Query 173691 ACAGATATTTGGTATCGCATTTTCAAACAAAAGATTTTTACACTTCCTCATGTTGTTCGT 173750 || || ||||| | || ||||| || ||| | | ||||| ||| | ||||| || || Sbjct 983250 CCAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGT 983191 Query 173751 ACCTGTCATGGGTATGTGGACATCATCCATAGGTATCGTAGGTCTTGCACTTAACCTTAG 173810 ||| || | ||| | |||| | | || | || ||||| || | || || | Sbjct 983190 ACCAGTAACTGGTTTATGGATGAGTGCTTTTGGAGTAGTCGGTCTGGCTTTGAATCTACG 983131 Query 173811 AGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGATCCAGAGTTCGAGACTTT 173870 || || ||||| || |||||||| || | ||||| |||||||| || || ||||||| Sbjct 983130 TGCCTATGACTTCGTTTCTCAAGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTG 983071 Query 173871 CTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCATGGATGTCATCTGTAGATCA 173930 |||||| || ||||| || | || || ||||| | || |||||| | || |||||| Sbjct 983070 CTACACCAAAAATATTCTCTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCA 983011 Query 173931 ACCACATGAGAACTTCGTATTTCCAGAAGAAGTGTTACCAAGAGGTAACGCACTTTAA 173988 || ||||| ||||| |||| || || || || || | | || ||||| |||||| Sbjct 983010 GCCTCATGAAAACTTTATATTCCCTGAGGAGGTTCTATCTCGTGGAAACGCTCTTTAA 982953 >seq716 Length=92840 Score = 143 bits (158), Expect = 3e-29 Identities = 199/279 (71%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 172281 TGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCA 172340 ||||||||| ||||| ||||| |||| |||||||||||| | || || ||||| ||||| Sbjct 34196 TGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTTCAAGCTGAGCA 34137 Query 172341 TAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTT 172400 | || || ||||| || || | ||| ||| ||||| || | || || || || | Sbjct 34136 CTATATCCTTATGCACCCATTTCTTATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCT 34077 Query 172401 ATTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGC 172460 |||| || || || ||||| || || || ||| | | || || | || || ||| Sbjct 34076 ATTCAGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTGATAAGGAAAACCACAGAAAA 34017 Query 172461 AGAATCACAGAACTACGGATACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGC 172520 ||||| || | || |||| ||||| ||||| |||||||| || || || ||||| Sbjct 34016 TGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGC 33957 Query 172521 AGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGC 172559 || || ||||| ||||| || | |||||||| ||||| Sbjct 33956 CGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGC 33918 >seq269 Length=207462 Score = 93.3 bits (102), Expect = 5e-14 Identities = 141/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 172953 TGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGTCT 173012 |||| || | || || |||||| ||| || |||||||| || | || ||||| ||||| Sbjct 67670 TGATATTATGGATGATTGGTTATGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCT 67611 Query 173013 TTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTCGT 173072 || || | |||||||| || | || | || ||||||||| ||| || ||| || Sbjct 67610 ATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGAGGTTGGTTCGCAGGTACAGTCTTTGT 67551 Query 173073 TACATCATGGTATA--CACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTTTTA 173130 || |||||||||| | ||||| | ||| ||| ||| | |||||| ||||| || Sbjct 67550 AACTTCATGGTATACTCTCATGGATTAGCAAGTTCCTATTTGGAAGGATGCAACTTCTTG 67491 Query 173131 ACAGCAGCAGTCTCCACACC 173150 | || ||||| || || || Sbjct 67490 CCTGCCGCAGTTTCTACTCC 67471 >seq257 Length=213233 Score = 89.7 bits (98), Expect = 6e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 173405 GTTGGTTCTTCGCACCTTCATTCGGTGTCGCAGCAATCTTTCGTTATATCTTATTCATAC 173464 |||||||||| ||||| || ||||| ||||| || ||||| | ||| |||| | | Sbjct 14412 GTTGGTTCTTTGCACCCAATTTTGGTGTAGCAGCTATATTTCGATTCATCCTATTTTTCC 14353 Query 173465 AAGGTTTCCACAACATTACATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAG 173524 |||| || | || |||||||| |||||||||||||||| ||||| | || | | Sbjct 14352 AAGGGTTTTATAATTGGACATTGAACTCATTTCACATGATGGGAGTTGCCGAGGTATTGG 14293 Query 173525 GTGGAGCATTACTATGTGCCATTCATG 173551 ||| || | |||||||| ||||||| Sbjct 14292 GTGCTGCTATGCTATGTGCTATTCATG 14266 >seq168 Length=274740 Score = 89.7 bits (98), Expect = 6e-13 Identities = 143/204 (70%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 172608 TGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGG 172667 ||| ||| || | ||||| || ||| | ||||| | | ||||| || ||| | || || Sbjct 245234 TGTAGTAGGTATTTGGTTTAC-TCTTTAGGTATTAGCATCATGGCTTTTAACTTAAATGG 245292 Query 172668 TTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCTACATGGGGTGA 172727 ||| || ||||| |||| || || ||| | | ||| | || ||| | || | | Sbjct 245293 TTTTAATTTCAATCAATTTGTAGTTGATAGTTAAGGTCGTGTAATTAATACCTAGGTTAA 245352 Query 172728 CGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGCACACAACTT 172787 | ||||| | || || || ||||||||||||||||||||| | ||||| || ||||| Sbjct 245353 TATCATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTT 245412 Query 172788 CCCATTAGACCTTGCTTCTGCAGA 172811 | | ||||||| || ||| ||| Sbjct 245413 CTCTCTAGACCTAGCGGCTGTAGA 245436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587845418833200