Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq716 163 3e-35 seq1 161 1e-34 seq257 149 7e-31 seq272 105 7e-18 seq168 93.3 5e-14 seq2 89.7 6e-13 >seq716 Length=92840 Score = 163 bits (180), Expect = 3e-35 Identities = 201/275 (73%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 162850 ATGCCCTTGGGTATCAGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAAC 162909 ||||| | || ||| | |||| ||||||| ||| |||| || ||||| |||||| | Sbjct 34192 ATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTTCAAGCTGAGCACTAT 34133 Query 162910 ATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTC 162969 || || ||||| || || | ||||| ||||| || ||||| ||||| || || || ||| Sbjct 34132 ATCCTTATGCACCCATTTCTTATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTC 34073 Query 162970 AGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAG 163029 ||||| || || ||||| ||||| || ||| | | | | || || |||| ||| Sbjct 34072 AGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTGATAAGGAAAACCACAGAAAATGAA 34013 Query 163030 TCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCC 163089 || || | ||||||| ||||||||||| ||||| || || || || || || || Sbjct 34012 TCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGCCGCT 33953 Query 163090 CATGGTTACTTCGGTCGTTTGATCTTCCAATATGC 163124 |||||||| || || || ||||||||||||||||| Sbjct 33952 CATGGTTATTTTGGCCGATTGATCTTCCAATATGC 33918 >seq1 Length=1764766 Score = 161 bits (178), Expect = 1e-34 Identities = 242/342 (71%), Gaps = 4/342 (1%) Strand=Plus/Minus Query 164299 GAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTGCG 164358 ||||| |||||||| ||||| || || |||||||| ||||| || ||||| || ||||| Sbjct 983291 GAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCT 983232 Query 164359 TTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGG 164418 ||||| || || | ||| | ||||| || ||||| ||||| || || | ||| ||||| Sbjct 983231 TTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGG 983172 Query 164419 ACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGATTTTGTAAGT 164478 | || |||| | | || || ||| | ||||| ||||| || || || || | Sbjct 983171 ATGAGTGCTTTTGGAGTAGTCGGTCTGGCTTTGAATCTACGTGCCTATGACTTCGTTTCT 983112 Query 164479 CAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACTTTCTATACCAAGAACATCTTA 164538 ||||| || | ||||| ||||||||||| || ||||||| ||| ||||| || || | Sbjct 983111 CAAGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTGCTACACCAAAAATATTCTC 983052 Query 164539 TTGAACGAAGGACTCCGTGCATGGTTAGCACCAGTTGACCAGC--CAGGAGAACGGTTTG 164596 || ||||| || | ||||| ||| | || | || |||| || || ||| ||| Sbjct 983051 TTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAAC--TTTA 982994 Query 164597 TCTTCCCAGAAGAAGTACTGCCGAGAGGTAATGCGCTTTAAT 164638 | ||||| || || || || | | || || || ||||||| Sbjct 982993 TATTCCCTGAGGAGGTTCTATCTCGTGGAAACGCTCTTTAAT 982952 >seq257 Length=213233 Score = 149 bits (164), Expect = 7e-31 Identities = 243/350 (69%), Gaps = 0/350 (0%) Strand=Plus/Minus Query 164002 AATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCT 164061 ||||| || || ||||| | ||| |||| ||| || ||| ||| || || || || || Sbjct 14485 AATGCAATCGCATTCTCCGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTGATTTATCCA 14426 Query 164062 CTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTGGAGTGGCAGCAATCTTCAGATTC 164121 ||||| | |||||||||| || || |||||| || ||||| || || ||||| Sbjct 14425 TAAGGTCAGTTTGGTTGGTTCTTTGCACCCAATTTTGGTGTAGCAGCTATATTTCGATTC 14366 Query 164122 CTCTTATTCCTTCAAGGATTTCATAACTGGACTTTGAACCCCTTCCATATGATGGGAGTT 164181 || |||| | ||||| ||| |||| ||||| |||||| | || || |||||||||||| Sbjct 14365 ATCCTATTTTTCCAAGGGTTTTATAATTGGACATTGAACTCATTTCACATGATGGGAGTT 14306 Query 164182 GCTGGTATACTAGGCGGAGCATTGCTATCTGCTATTCACGGAGTCACAGTTGAAAATACA 164241 || | || | || | || |||||| ||||||||| | || | |||||||| Sbjct 14305 GCCGAGGTATTGGGTGCTGCTATGCTATGTGCTATTCATGACACTACCATAGAAAATACC 14246 Query 164242 TTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACAGGAAGAA 164301 || | |||||||| || | ||| || || | ||| | | || || ||| Sbjct 14245 TTATTTGAAGATGATGATGGTGTAAATACATTCCCTACTTTTAACCCAACTCAAACTGAA 14186 Query 164302 GAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGG 164351 | |||||||| ||||| || || ||| |||| ||||| || ||||| || Sbjct 14185 TAAACTTATTCAATGGTTACCGCTAACTGCTTTTGGTCCCAAATCTTTGG 14136 >seq272 Length=206342 Score = 105 bits (116), Expect = 7e-18 Identities = 278/416 (67%), Gaps = 20/416 (5%) Strand=Plus/Minus Query 163852 CTCTGGGGTCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGG 163911 || |||| |||||| || || ||||||| || ||| ||| | | || || ||| Sbjct 147058 CTATGGGATCCTGAAGCACAATGCGATTTTACTCGTTGGTGTCAAATAAGTGGTCTGTGG 146999 Query 163912 AATTTTGTGGCACTCCACGGAGCCTTTGCT--CTCATTGGTTTCATGCTTCGGCAATTTG 163969 | |||||| | || || || | ||| | || || ||||| | | || ||||||| Sbjct 146998 ACTTTTGTTGTTCTTCATGG--CATTTTCAAACTAATAGGTTTTACATTACGTCAATTTG 146941 Query 163970 AACTTGCTCGC-CTGATTGGAATCAGACCCTACAATGCGATTG---CTTTCTCTGGTCCT 164025 |||||||||| ||| || | | || || ||| || | ||||| | ||| Sbjct 146940 AACTTGCTCGATCTG-TTCAATTGTATCCTTATAATATTATAATCACATTCTCCGCTCCA 146882 Query 164026 ATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTC 164085 |||| ||| || | | ||| || | || || || | | ||| || ||||| || Sbjct 146881 ATTGTTGTTTTTGGTTCTGTATTCTTGATTTATCCGTTAGTTCAGTC----TGGTTTTTT 146826 Query 164086 GCTCCATCTTTTGGAGTGGCAGCAATCTTCAGATT---CCTCTTATTCCTTCAAGGATTT 164142 | || |||| | || | ||| || || |||| |||||| |||| |||| ||| Sbjct 146825 ACACCCAGTTTTAGCGTAGTAGCTATATTACGATTTACCCTCTTTTTCC---AAGGGTTT 146769 Query 164143 CATAACTGGACTTTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCA 164202 ||||| |||| || ||||| || || ||||||||||||||||| || || | | ||| Sbjct 146768 CATAATTGGAAATTTAACCCATTTCACATGATGGGAGTTGCTGGGGTATTA-GTGTTGCA 146710 Query 164203 TTGCTATCTGCTATTCACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGA 164258 |||||| |||||| || || | | || || ||||| || | ||||||||| || Sbjct 146709 CTGCTATGTGCTATCCATGGCGCTATCGTAGACAATACTTTATTTGAAGATGGTGA 146654 >seq168 Length=274740 Score = 93.3 bits (102), Expect = 5e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 163212 CATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCG 163271 |||||| || ||| | || ||||| || ||||| || | | ||||| || | ||||| Sbjct 245272 CATGGCTTTTAACTTAAATGGTTTTAATTTCAATCAATTTGTAGTTGATAGTTAAGGTCG 245331 Query 163272 TGTGTTGAACACCTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCA 163331 ||| | || |||| || | | | |||||||| | | ||||||||||||||||| Sbjct 245332 TGTAATTAATACCTAGGTTAATATCATTAACCGTGCTAATCTTGGTATGGAAGTTATGCA 245391 Query 163332 CGAGCGCAATGCTCACAACTTCCCACTTGACCTGGCAGCTG 163372 || || |||||||| |||||| | || ||||| || |||| Sbjct 245392 TGAACGTAATGCTCATAACTTCTCTCTAGACCTAGCGGCTG 245432 >seq2 Length=1456787 Score = 89.7 bits (98), Expect = 6e-13 Identities = 104/141 (74%), Gaps = 7/141 (5%) Strand=Plus/Plus Query 163062 AGAAGAGACATACAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATA 163121 |||||| || || || || || || || |||||||| || || || ||||| |||||||| Sbjct 1455406 AGAAGAAACCTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATATTCCAATA 1455465 Query 163122 TGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGG 163181 ||| ||| | ||||| || ||||||||| | ||||| |||||||| || || Sbjct 1455466 TGCTAGTTTC-------CTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTGGG 1455518 Query 163182 CATCTGGTTCACCGCCCTTGG 163202 || ||||| ||||| |||| Sbjct 1455519 TATTTGGTTTACCGCTTTTGG 1455539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557388880449000