Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq1 233 2e-56 seq716 203 4e-47 seq257 143 3e-29 seq1194 114 1e-20 seq964 93.3 5e-14 seq269 91.5 2e-13 seq168 89.7 6e-13 >seq1 Length=1764766 Score = 233 bits (258), Expect = 2e-56 Identities = 258/344 (75%), Gaps = 0/344 (0%) Strand=Plus/Minus Query 169152 ACTCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTT 169211 ||||| | || || || |||||||||||||| || ||||| || ||||| || |||||| Sbjct 983300 ACTCAAGCTGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATCTTT 983241 Query 169212 GGTATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATG 169271 || |||| || ||||| | ||||| |||||||||||| | ||||| || || | Sbjct 983240 GGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACT 983181 Query 169272 GGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGAC 169331 ||| | |||| ||| | | || | | ||||| ||| | || || ||||| |||||| Sbjct 983180 GGTTTATGGATGAGTGCTTTTGGAGTAGTCGGTCTGGCTTTGAATCTACGTGCCTATGAC 983121 Query 169332 TTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCTACACCAAG 169391 || ||||| ||||| ||| | ||||| |||||||| || |||||||| | ||||||||| Sbjct 983120 TTCGTTTCTCAAGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTGCTACACCAAA 983061 Query 169392 AACATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTGATCAACCTCATGAG 169451 || || ||||| ||||| ||| ||||||| ||| | || || ||||| |||||||| Sbjct 983060 AATATTCTCTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 983001 Query 169452 AACTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGTAATGCCCT 169495 |||||| | ||||||||||| || || | || || || || || Sbjct 983000 AACTTTATATTCCCTGAGGAGGTTCTATCTCGTGGAAACGCTCT 982957 >seq716 Length=92840 Score = 203 bits (224), Expect = 4e-47 Identities = 210/275 (76%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 167553 ATGCCTCTTGGTATCTCTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAAC 167612 |||||||| || |||||| |||| ||||||| ||| |||| || ||||| |||||| | Sbjct 34192 ATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTTCAAGCTGAGCACTAT 34133 Query 167613 ATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTC 167672 ||||| |||||||| || | |||| | || || ||||| ||||||||||| || || ||| Sbjct 34132 ATCCTTATGCACCCATTTCTTATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTC 34073 Query 167673 AGTGCAATGCACGGTTCTCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAG 167732 ||||| || || ||||| |||| |||||| || | | ||||||| |||| ||| Sbjct 34072 AGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTGATAAGGAAAACCACAGAAAATGAA 34013 Query 167733 TCCCAGAACTATGGTTACAAGTTCGGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCT 167792 || || | ||||||| |||||||| || ||||| || ||||| || || || ||| Sbjct 34012 TCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGCCGCT 33953 Query 167793 CATGGTTACTTCGGTCGCCTGATCTTCCAATACGC 167827 |||||||| || || || ||||||||||||| || Sbjct 33952 CATGGTTATTTTGGCCGATTGATCTTCCAATATGC 33918 >seq257 Length=213233 Score = 143 bits (158), Expect = 3e-29 Identities = 244/352 (69%), Gaps = 4/352 (1%) Strand=Plus/Minus Query 168864 AATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCT 168923 ||||| || || ||||| | ||| || | |||||||||| || || || || || || Sbjct 14485 AATGCAATCGCATTCTCCGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTGATTTATCCA 14426 Query 168924 CTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTC 168983 ||||| | ||||||| || || || ||| || || |||| || || |||||| Sbjct 14425 TAAGGTCAGTTTGGTTGGTTCTTTGCACCCAATTTTGGTGTAGCAGCTATATTTCGATTC 14366 Query 168984 CTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCATATGATGGGTGTA 169043 | || || | ||||| || |||| |||||| |||| ||||||| |||||||| || Sbjct 14365 ATCCTATTTTTCCAAGGGTTTTATAATTGGACATTGAACTCATTTCACATGATGGGAGTT 14306 Query 169044 GC--AGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATA 169101 || ||||||| ||| | || |||| | ||| ||||||| ||| |||| |||| Sbjct 14305 GCCGAGGTATT--GGGTGCTGCTATGCTATGTGCTATTCATGACACTACCATAGAAAATA 14248 Query 169102 CTCTGTATCAAGATGGTGAACAAGCAAATACTTTCAAAGCATTTGACAGCACTCAGGAAG 169161 | | | | |||||| ||| | |||||| ||| | ||| || ||||| | Sbjct 14247 CCTTATTTGAAGATGATGATGGTGTAAATACATTCCCTACTTTTAACCCAACTCAAACTG 14188 Query 169162 AGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTGG 169213 | | || |||||||||||||| || ||| | || ||||| || |||||||| Sbjct 14187 AATAAACTTATTCAATGGTTACCGCTAACTGCTTTTGGTCCCAAATCTTTGG 14136 >seq1194 Length=46772 Score = 114 bits (126), Expect = 1e-20 Identities = 202/292 (69%), Gaps = 2/292 (1%) Strand=Plus/Minus Query 168512 GGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGC 168571 ||| |||||||||||||| | |||||| || || | || ||| ||| ||| | | Sbjct 21570 GGACCGTTTCGTTTTTGTAGATTGGTCCGGTCTATTGCTATTTTTTTGTGCCTATTTCAC 21511 Query 168572 TATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGGTATACTCACGGGTTGGC 168631 | | || |||||| | | || | | || || || || |||||||| || || || Sbjct 21510 TTTAGGAGGTTGGTTCATAGGTATAACCTTTGTAACTTCATGCTATACTCATGGATTAGC 21451 Query 168632 AAGTTCCTATCTGGAGGGCGCAAACTTTCTTACTGCGGCAGTTAGTACTCCAGCAGATTC 168691 |||||||||| |||| ||||| | ||||| | |||| ||||| | || Sbjct 21450 AAGTTCCTATTTGGAATAATACAACTTCTTAACTGCCGTAGTTTCGACTCCCGTTAATAG 21391 Query 168692 TATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCACAAGGGGA-TTTCGTCAGAT 168750 | | | || ||| | |||| || |||||||||| |||||||| || ||| ||| | Sbjct 21390 TTTTGCACACTCTTTGTTGCTACTAGGGGGTCCTGAAGCACAAGGCGATTTTACTCA-TT 21332 Query 168751 GGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGC 168802 |||||||| | || || || ||| ||||||| || |||||||| ||||| || Sbjct 21331 GGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCACTCCACGGTGCTTTTGC 21280 >seq964 Length=67008 Score = 93.3 bits (102), Expect = 5e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 169189 ACCGTTTCTGGTCTCAGATCTTTGGTATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCT 169248 |||| || ||||| || |||||||| ||| || ||||| | ||||| ||||||| Sbjct 23419 ACCGCTTTTGGTCCCAAATCTTTGGGGTTGTTTTTTCCAATAAACGTTGGTTACATTTCT 23478 Query 169249 TTATGCTGTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTG 169308 ||||| | ||| | || || | ||| | | || ||| | | || | | ||||| | Sbjct 23479 TTATGTTATTTATACCAGTAACTGGTTTATAGATGAGTGCTCTTGGAGTAGTCGGTCTGG 23538 Query 169309 CTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAG 169368 || | || | ||||| |||||||| ||||| ||||| ||| |||| |||||||| | Sbjct 23539 CTTTGAATTTACGTGCCTATGACTTCGTTTCTCAAGAAATCCATTCAGCGGAAGATCCTG 23598 Query 169369 AGTTTGAGA 169377 | ||||||| Sbjct 23599 AATTTGAGA 23607 >seq269 Length=207462 Score = 91.5 bits (100), Expect = 2e-13 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 168511 GGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTG 168570 |||| |||||||||||||| |||||||| || || | || ||||| ||| ||| | | Sbjct 67644 GGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTTCCTTGTGCCTATTTCG 67585 Query 168571 CTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGGTATA--CTCACGGGTT 168628 || | || |||||| | | || || | || || || ||||||| |||| || || Sbjct 67584 CTTTAGGAGGTTGGTTCGCAGGTACAGTCTTTGTAACTTCATGGTATACTCTCATGGATT 67525 Query 168629 GGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTTACTGCGGCAGTTAGTACTCCAGC 168685 |||||||||||| |||| || ||||| | |||| |||||| |||||| || Sbjct 67524 AGCAAGTTCCTATTTGGAAGGATGCAACTTCTTGCCTGCCGCAGTTTCTACTCCCGC 67468 >seq168 Length=274740 Score = 89.7 bits (98), Expect = 6e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 167922 TTCAACCTGAACGGTTTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTG 167981 || ||| | || ||||| || ||||| || | | | ||||||||| ||| || | Sbjct 245279 TTTAACTTAAATGGTTTTAATTTCAATCAATTTGTAGTTGATAGTTAAGGTCGTGTAATT 245338 Query 167982 CCTACTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGT 168041 ||| | || | | | ||||||||| ||| ||||||||||||||||| || ||| Sbjct 245339 AATACCTAGGTTAATATCATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGT 245398 Query 168042 AATGCTCACAACTTCCCTCTCGACCTTGCTGCTG 168075 |||||||| |||||| |||| ||||| || |||| Sbjct 245399 AATGCTCATAACTTCTCTCTAGACCTAGCGGCTG 245432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560411822238000