Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq1 224 1e-53 seq716 176 6e-39 seq257 176 6e-39 seq272 168 8e-37 seq168 109 7e-19 seq964 107 2e-18 >seq1 Length=1764766 Score = 224 bits (248), Expect = 1e-53 Identities = 259/349 (74%), Gaps = 0/349 (0%) Strand=Plus/Minus Query 183850 ACTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTTC 183909 ||||||| ||||| || ||||| |||||||| || || || || ||||| |||||||| Sbjct 983300 ACTCAAGCTGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATCTTT 983241 Query 183910 GGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATG 183969 |||||||| ||| |||||| ||||||| || ||||||||||| ||||| || || | Sbjct 983240 GGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACT 983181 Query 183970 GGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGAT 184029 ||| | ||| | | || |||| | | || || ||| | ||||| ||||| ||||| Sbjct 983180 GGTTTATGGATGAGTGCTTTTGGAGTAGTCGGTCTGGCTTTGAATCTACGTGCCTATGAC 983121 Query 184030 TTTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACGTTCTACACAAAG 184089 || || |||||| ||| | ||||| |||||||| ||||||||||| | |||||| || Sbjct 983120 TTCGTTTCTCAAGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTGCTACACCAAA 983061 Query 184090 AACATACTTCTTAATGAAGGACTACGTGCATGGTTAGCACCTTCTGATCAACCACATGAG 184149 || || || | || || || | ||||| ||| | || || ||||| || ||||| Sbjct 983060 AATATTCTCTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 983001 Query 184150 AATTTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATGCTCTTTGAT 184198 || |||||||| || |||||||| || || | || || ||||||| || Sbjct 983000 AACTTTATATTCCCTGAGGAGGTTCTATCTCGTGGAAACGCTCTTTAAT 982952 >seq716 Length=92840 Score = 176 bits (194), Expect = 6e-39 Identities = 204/275 (74%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 182259 ATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTTGGTTTTCCAAGCTGAGCACAAC 182318 ||||| || |||||||| | || ||||||| |||| | || || |||||||||||| | Sbjct 34192 ATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTTCAAGCTGAGCACTAT 34133 Query 182319 ATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGGTGTATTCGGTGGTTCACTGTTT 182378 || |||||||| || || | ||||| |||||||| ||||||||||| || || || || Sbjct 34132 ATCCTTATGCACCCATTTCTTATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTC 34073 Query 182379 AGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAGCAAGAG 182438 ||||| || || ||||| ||||| || ||| | | | | || || || | || Sbjct 34072 AGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTGATAAGGAAAACCACAGAAAATGAA 34013 Query 182439 TCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTATAACATCGTTGCAGCC 182498 || || | ||||||| ||||||||||| ||||| |||||||| || || || || Sbjct 34012 TCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGCCGCT 33953 Query 182499 CATGGCTACTTCGGTCGTTTGATCTTCCAATACGC 182533 ||||| || || || || |||||||||||||| || Sbjct 33952 CATGGTTATTTTGGCCGATTGATCTTCCAATATGC 33918 >seq257 Length=213233 Score = 176 bits (194), Expect = 6e-39 Identities = 253/354 (71%), Gaps = 6/354 (2%) Strand=Plus/Minus Query 183562 AATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCTTATCTATCCA 183621 ||||| || || ||||| | ||| |||| ||||||||| ||||||||| || |||||| Sbjct 14485 AATGCAATCGCATTCTCCGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTGATTTATCCA 14426 Query 183622 CTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGATTC 183681 ||||||| | |||||||||||||| | ||| || |||||||| || ||| ||||| Sbjct 14425 TAAGGTCAGTTTGGTTGGTTCTTTGCACCCAATTTTGGTGTAGCAGCTATATTTCGATTC 14366 Query 183682 ---CTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATATGATGGGA 183738 ||||| |||| ||||||| | || ||||| || ||| | || || ||||||||| Sbjct 14365 ATCCTATTTTTCCA--AGGGTTTT-ATAATTGGACATTGAACTCATTTCACATGATGGGA 14309 Query 183739 GTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACAGTAGAGAAT 183798 ||||| | || | || | || | || ||||||| |||| || |||| ||| Sbjct 14308 GTTGCCGAGGTATTGGGTGCTGCTATGCTATGTGCTATTCATGACACTACCATAGAAAAT 14249 Query 183799 ACATTGTATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTCCACTCAAGAA 183858 || || | |||||||| || | ||| |||||| | ||| | | |||||| Sbjct 14248 ACCTTATTTGAAGATGATGATGGTGTAAATACATTCCCTACTTTTAACCCAACTCAAACT 14189 Query 183859 GAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTTCGGG 183912 ||| | || ||||| |||||||| || || | || ||||| |||||||| ||| Sbjct 14188 GAATAAACTTATTCAATGGTTACCGCTAACTGCTTTTGGTCCCAAATCTTTGGG 14135 >seq272 Length=206342 Score = 168 bits (186), Expect = 8e-37 Identities = 312/450 (69%), Gaps = 26/450 (6%) Strand=Plus/Minus Query 183397 CATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTCAAGGGGACTTTCAACGCTGGTGCCAA 183456 |||||| | ||||||| |||| |||||| | ||| | || ||| || ||||| ||| Sbjct 147073 CATTCTTTAATGTTACTATGGGATCCTGAAGCACAATGCGATTTTACTCGTTGGTGTCAA 147014 Query 183457 CTTGGGGGACTCTGGAATTTTGTGGCACTCCACGGTGCCTTTGCT--CTCATTGGTTTCA 183514 | | || || |||| |||||| | || || || | ||| | || || ||||| | Sbjct 147013 ATAAGTGGTCTGTGGACTTTTGTTGTTCTTCATGG--CATTTTCAAACTAATAGGTTTTA 146956 Query 183515 TGCTTCGACAGTTTGAACTTGCTCGCT----TGATTGGTATCCGTCCTTACAATGCTATT 183570 | || || |||||||||||||| | | | | |||||| ||| ||| ||| Sbjct 146955 CATTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGTATCC----TTATAATATTATA 146900 Query 183571 G---CGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCTTATCTATCCACTGGGT 183627 | ||||| | ||| |||| |||||||| ||||||| | || ||||| | | | Sbjct 146899 ATCACATTCTCCGCTCCAATTGTTGTTTTTGGTTCTGTATTCTTGATTTATCCGTTAGTT 146840 Query 183628 CAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGATT---CCTA 183684 |||||| |||| ||| |||| ||||| | |||| ||| || || |||| ||| Sbjct 146839 CAGTCT----GGTTTTTTACACCCAGTTTTAGCGTAGTAGCTATATTACGATTTACCCTC 146784 Query 183685 TTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATATGATGGGAGTTGCT 183744 || |||| |||||||| | || |||| || ||||| || || ||||||||||||||| Sbjct 146783 TTTTTCCA--AGGGTTTC-ATAATTGGAAATTTAACCCATTTCACATGATGGGAGTTGCT 146727 Query 183745 GGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACAGTAGAGAATACATTG 183804 || || || | | ||||| || ||||||||||||| | | ||||| ||||| || Sbjct 146726 GGGGTATTA-GTGTTGCACTGCTATGTGCTATCCATGGCGCTATCGTAGACAATACTTTA 146668 Query 183805 TATGAAGATGGAGAACAAGCAAACACATTC 183834 | ||||||||| || | ||| |||||| Sbjct 146667 TTTGAAGATGGTGATGGTGTAAATACATTC 146638 >seq168 Length=274740 Score = 109 bits (120), Expect = 7e-19 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 182622 ATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGT 182681 ||||| || ||| | || ||||| || ||||| || | | ||||| || | |||||| Sbjct 245273 ATGGCTTTTAACTTAAATGGTTTTAATTTCAATCAATTTGTAGTTGATAGTTAAGGTCGT 245332 Query 182682 GTCCTTAACACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTATGCAT 182741 || |||| || | || || | | ||||||||| |||||||||||||||||||||| Sbjct 245333 GTAATTAATACCTAGGTTAATATCATTAACCGTGCTAATCTTGGTATGGAAGTTATGCAT 245392 Query 182742 GAGCGTAACGCACACAACTTCCCACTAGATCTTGCTGCTG 182781 || ||||| || || |||||| | ||||| || || |||| Sbjct 245393 GAACGTAATGCTCATAACTTCTCTCTAGACCTAGCGGCTG 245432 >seq964 Length=67008 Score = 107 bits (118), Expect = 2e-18 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 183889 CGTTTCTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTT 183948 || || ||||| |||||||| ||||||| ||| |||||| |||||||| || |||||| Sbjct 23421 CGCTTTTGGTCCCAAATCTTTGGGGTTGTTTTTTCCAATAAACGTTGGTTACATTTCTTT 23480 Query 183949 ATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTGCT 184008 ||||| ||| | || || | ||| | | | | | || |||| | | || || ||| Sbjct 23481 ATGTTATTTATACCAGTAACTGGTTTATAGATGAGTGCTCTTGGAGTAGTCGGTCTGGCT 23540 Query 184009 CTTAATCTTCGTGCTTATGATTTTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAA 184068 | ||| | ||||| ||||| || || |||||| ||| |||| |||||||| ||| Sbjct 23541 TTGAATTTACGTGCCTATGACTTCGTTTCTCAAGAAATCCATTCAGCGGAAGATCCTGAA 23600 Query 184069 TTTGAGA 184075 ||||||| Sbjct 23601 TTTGAGA 23607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611481944631000