Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq1 259 5e-64 seq257 161 1e-34 seq272 122 1e-22 seq168 120 3e-22 seq716 111 2e-19 seq1194 107 2e-18 seq90 91.5 2e-13 seq964 89.7 6e-13 seq269 82.4 9e-11 seq2 82.4 9e-11 >seq1 Length=1764766 Score = 259 bits (286), Expect = 5e-64 Identities = 266/348 (76%), Gaps = 0/348 (0%) Strand=Plus/Minus Query 166830 ACTCAAGAGGAAGAAACCTATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTC 166889 ||||||| |||||||| |||||||||||||| || ||||||| |||||| || ||||| Sbjct 983300 ACTCAAGCTGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATCTTT 983241 Query 166890 GGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATG 166949 || |||| ||| ||||| | ||||| |||||||||||| | ||||| || || | Sbjct 983240 GGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACT 983181 Query 166950 GGTCTGTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGAC 167009 ||| | |||| ||| | | || | | ||||| ||| | || || ||||| |||||| Sbjct 983180 GGTTTATGGATGAGTGCTTTTGGAGTAGTCGGTCTGGCTTTGAATCTACGTGCCTATGAC 983121 Query 167010 TTTGTTTCCCAAGAACTAAGGGCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAG 167069 || ||||| |||||| | | ||||| || |||||||| ||||| || | ||| ||||| Sbjct 983120 TTCGTTTCTCAAGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTGCTACACCAAA 983061 Query 167070 AACATTCTCTTGAATGAGGGTATGCGTTCTTGGATGGCAACTATCGATCAACCTCATGAG 167129 || |||||||| || |||||||| ||| |||||||||| || ||||| |||||||| Sbjct 983060 AATATTCTCTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 983001 Query 167130 AGTTTCGTATTCCCTGAAGAGGTTCTTCCTAGAGGTAACGCTCTCTAA 167177 | || |||||||||| |||||||| || | || |||||||| ||| Sbjct 983000 AACTTTATATTCCCTGAGGAGGTTCTATCTCGTGGAAACGCTCTTTAA 982953 >seq257 Length=213233 Score = 161 bits (178), Expect = 1e-34 Identities = 248/352 (70%), Gaps = 4/352 (1%) Strand=Plus/Minus Query 166542 AATGCAATCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCT 166601 ||||||||||| || || | ||| |||| ||| || ||| ||| || || || || || Sbjct 14485 AATGCAATCGCATTCTCCGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTGATTTATCCA 14426 Query 166602 CTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTC 166661 ||||| | ||||||| || || || ||| || || |||| || || |||||| Sbjct 14425 TAAGGTCAGTTTGGTTGGTTCTTTGCACCCAATTTTGGTGTAGCAGCTATATTTCGATTC 14366 Query 166662 CTCCTTTTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGGTGTA 166721 |||| || | ||||| || | || |||||| ||||| ||||||| |||||||| || Sbjct 14365 ATCCTATTTTTCCAAGGGTTTTATAATTGGACATTGAACTCATTTCACATGATGGGAGTT 14306 Query 166722 GC--AGGTATTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACA 166779 || ||||||| |||| ||| |||| | ||| || |||| ||| |||| || | Sbjct 14305 GCCGAGGTATTG--GGTGCTGCTATGCTATGTGCTATTCATGACACTACCATAGAAAATA 14248 Query 166780 CTCTGTATCAAGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGG 166839 | | | | |||||| ||| | |||||| ||| | || || | |||||| | Sbjct 14247 CCTTATTTGAAGATGATGATGGTGTAAATACATTCCCTACTTTTAACCCAACTCAAACTG 14188 Query 166840 AAGAAACCTATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGG 166891 || |||| |||||||||||||| || ||| ||| |||||| || ||||| || Sbjct 14187 AATAAACTTATTCAATGGTTACCGCTAACTGCTTTTGGTCCCAAATCTTTGG 14136 >seq272 Length=206342 Score = 122 bits (134), Expect = 1e-22 Identities = 356/537 (66%), Gaps = 26/537 (5%) Strand=Plus/Minus Query 166292 GTATACTCATGGACTCGCAAGCAGTTATCTGGAGGG-TGCA---AACTTTCTTA-CTGCG 166346 ||||||||||||| | ||||| ||| |||| || | | ||||| |||| ||| Sbjct 147162 GTATACTCATGGATTAGCAAGTTCCTATTTGGAAGGATATATGTAACTT-CTTAGCTGTC 147104 Query 166347 GCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAG 166406 | |||||||||| | || | | | |||||| || | | || |||| |||||| Sbjct 147103 ATAATTTCTACTCCCGTTAATAGTTTAGCACATTCTTTAATGTTACTATGGGATCCTGAA 147044 Query 166407 GCTCAAGGGGATTTCGTCAGGTGGTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTC 166466 || ||| | ||||| | ||||| ||| | | || || ||| | ||||||| ||| Sbjct 147043 GCACAATGCGATTTTACTCGTTGGTGTCAAATAAGTGGTCTGTGGACTTTTGTTGTTCTT 146984 Query 166467 CACGGTGCTTTTGCCCTAATTGGTTTCATGCTTCGGCAGTTTGAAATCGCTCG-TCTAGT 166525 || || ||| ||||| ||||| | | || || |||||| | ||||| ||| | Sbjct 146983 CATGGCATTTTCAAACTAATAGGTTTTACATTACGTCAATTTGAACTTGCTCGATCTGTT 146924 Query 166526 AGGTATTCGTCCGTACAATGC---AATCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAG 166582 | | ||| || ||| |||| | || || | ||| |||| ||| || | | Sbjct 146923 CAATTGTA-TCCTTATAATATTATAATCACATTCTCCGCTCCAATTGTTGTTTTTGGTTC 146865 Query 166583 TGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGT 166642 ||| || | || || || | | ||| || |||||||| | || ||| | || Sbjct 146864 TGTATTCTTGATTTATCCGTTAGTTCAGTC----TGGTTTTTTACACCCAGTTTTAGCGT 146809 Query 166643 CTCAGCAATCTTCCGATT---CCTCCTTTTCCTTCAAGGATTCCACAACTGGACACTGAA 166699 ||| || || ||||| |||| |||||| |||| || || || |||| | | || Sbjct 146808 AGTAGCTATATTACGATTTACCCTCTTTTTCC---AAGGGTTTCATAATTGGAAATTTAA 146752 Query 166700 CCCATTTCATATGATGGGTGTAGC--AGGTATTCTCGGTGGTGCATTGCTTTCTGCCATC 166757 ||||||||| |||||||| || || |||||| ||| |||| |||| | ||| ||| Sbjct 146751 CCCATTTCACATGATGGGAGTTGCTGGGGTATT---AGTGTTGCACTGCTATGTGCTATC 146695 Query 166758 CATGGTGTTACAGTAGAGAACACTCTGTATCAAGATGGTGAACAGGCAAATACTTTC 166814 ||||| | || ||||| || ||| | | | |||||||||| | |||||| ||| Sbjct 146694 CATGGCGCTATCGTAGACAATACTTTATTTGAAGATGGTGATGGTGTAAATACATTC 146638 >seq168 Length=274740 Score = 120 bits (132), Expect = 3e-22 Identities = 151/204 (74%), Gaps = 9/204 (4%) Strand=Plus/Plus Query 165552 TGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAACGG 165611 |||||| ||||| ||||| ||| || | ||| |||||| |||||| || ||| | || || Sbjct 245234 TGTAGTAGGTATTTGGTTTACT-CTTTAGGTATTAGCATCATGGCTTTTAACTTAAATGG 245292 Query 165612 TTTCAACTTCAACCAGTCTATTGTTGATAGTCA-GAACA---AAATCATCCCTACTTGGG 165667 ||| || ||||| || | | | ||||||||| | | | || | || |||| || Sbjct 245293 TTTTAATTTCAATCAATTTGTAGTTGATAGTTAAGGTCGTGTAATTAATACCTA----GG 245348 Query 165668 CTGACGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACA 165727 | | | | ||||||||| ||| |||||||||||||||||||| ||||| ||||| | Sbjct 245349 TTAATATCATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATA 245408 Query 165728 ACTTCCCCCTCGACCTCGCTGCTG 165751 ||||| | || ||||| || |||| Sbjct 245409 ACTTCTCTCTAGACCTAGCGGCTG 245432 >seq716 Length=92840 Score = 111 bits (122), Expect = 2e-19 Identities = 192/279 (69%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 165225 TGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTCTTCCAAGCAGAACA 165284 |||||||||||| || |||||| ||||||| |||| |||| | || || ||||| || || Sbjct 34196 TGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTTCAAGCTGAGCA 34137 Query 165285 TAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTCT 165344 | || |||||||| || || | ||| | || || ||||| |||||||| || || || Sbjct 34136 CTATATCCTTATGCACCCATTTCTTATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCT 34077 Query 165345 TTTCTCTGCTATGCATGGAAGTCTTGTTACTTCCTCACTCGTCCGCGAGACAACTGAAAC 165404 ||| |||||| ||||| | || || || | | | | || || |||| Sbjct 34076 ATTCAGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTGATAAGGAAAACCACAGAAAA 34017 Query 165405 AGAGAGTCAGAACTACGGTTATAAGTTTGGACAAGAAGAAGAGACCTATAACATCGTCGC 165464 || | || | ||||| | || || ||||| ||||| |||||||| || || || Sbjct 34016 TGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGC 33957 Query 165465 TGCCCACGGGTACTTCGGTCGTCTCATTTTCCAATACGC 165503 || || || || || || || | || |||||||| || Sbjct 33956 CGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGC 33918 >seq1194 Length=46772 Score = 107 bits (118), Expect = 2e-18 Identities = 200/291 (69%), Gaps = 2/291 (1%) Strand=Plus/Minus Query 166191 GATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCT 166250 || |||||||||||||| | |||||| || || | || || ||| ||| | || Sbjct 21569 GACCGTTTCGTTTTTGTAGATTGGTCCGGTCTATTGCTATTTTTTTGTGCCTATTTCACT 21510 Query 166251 ATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGGTATACTCATGGACTCGCA 166310 | || |||||| ||| || | || || || || || |||||||||||| | ||| Sbjct 21509 TTAGGAGGTTGGTTCATAGGTATAACCTTTGTAACTTCATGCTATACTCATGGATTAGCA 21450 Query 166311 AGCAGTTATCTGGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGATGCT 166370 || ||| |||| ||||| | ||||| | |||||| ||||| | || | Sbjct 21449 AGTTCCTATTTGGAATAATACAACTTCTTAACTGCCGTAGTTTCGACTCCCGTTAATAGT 21390 Query 166371 ATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCG-TCAGGTG 166429 | | || ||| | | || || |||||||||| || ||||| ||||| ||| || Sbjct 21389 TTTGCACACTCTTTGTTGCTACTAGGGGGTCCTGAAGCACAAGGCGATTTTACTCAT-TG 21331 Query 166430 GTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGGTGCTTTTGC 166480 ||| ||| | || || || ||| | |||||||| ||||||||||||||||| Sbjct 21330 GTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCACTCCACGGTGCTTTTGC 21280 >seq90 Length=380041 Score = 91.5 bits (100), Expect = 2e-13 Identities = 105/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 164791 AACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCCCTGTTTGCTCGCCGCTACA 164850 ||||||||||| | || ||||| |||||| | |||||||| ||| | |||| || Sbjct 122825 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTATTTTATTGACCGCAAC- 122883 Query 164851 ATTTGT-TTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTATTCGTGA 164909 | ||| ||||||| || ||||| ||| | || || || || ||||||||||||| ||| Sbjct 122884 TTCTGTATTTATTATCGCTTTCATTGCTACCCCTCCAGTAGATATTGATGGTATTCATGA 122943 Query 164910 ACCTGTCGCAGGTTCTCTA 164928 |||||| | || |||||| Sbjct 122944 ACCTGTTTCTGGATCTCTA 122962 >seq964 Length=67008 Score = 89.7 bits (98), Expect = 6e-13 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 166867 ACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCT 166926 |||||| |||||| || ||||| || ||| ||| ||||| | ||||| ||||||| Sbjct 23419 ACCGCTTTTGGTCCCAAATCTTTGGGGTTGTTTTTTCCAATAAACGTTGGTTACATTTCT 23478 Query 166927 TTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCCATCGGTATTATTGGTCTTG 166986 ||||| | ||| | || || | ||| | | || ||| | | || | | ||||| | Sbjct 23479 TTATGTTATTTATACCAGTAACTGGTTTATAGATGAGTGCTCTTGGAGTAGTCGGTCTGG 23538 Query 166987 CTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACTAAGGGCAGCAGAGGATCCTG 167046 || | || | ||||| |||||||| ||||| |||||| | |||| || ||||||| Sbjct 23539 CTTTGAATTTACGTGCCTATGACTTCGTTTCTCAAGAAATCCATTCAGCGGAAGATCCTG 23598 Query 167047 AGTTTGA 167053 | ||||| Sbjct 23599 AATTTGA 23605 >seq269 Length=207462 Score = 82.4 bits (90), Expect = 9e-11 Identities = 126/176 (72%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 166191 GATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCT 166250 || |||||||||||||| |||||||| || || | || |||| ||| ||| | ||| Sbjct 67642 GACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCT 67583 Query 166251 ATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGGTATA--CTCATGGACTCG 166308 | || |||||| || | || || || || || ||||||| |||||||| | | Sbjct 67582 TTAGGAGGTTGGTTCGCAGGTACAGTCTTTGTAACTTCATGGTATACTCTCATGGATTAG 67523 Query 166309 CAAGCAGTTATCTGG-AGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGC 166363 |||| ||| ||| ||| ||| ||||| | |||| |||||||||||||| || Sbjct 67522 CAAGTTCCTATTTGGAAGGATGC-AACTTCTTGCCTGCCGCAGTTTCTACTCCCGC 67468 >seq2 Length=1456787 Score = 82.4 bits (90), Expect = 9e-11 Identities = 103/142 (73%), Gaps = 7/142 (5%) Strand=Plus/Plus Query 165441 AGAAGAGACCTATAACATCGTCGCTGCCCACGGGTACTTCGGTCGTCTCATTTTCCAATA 165500 |||||| |||||||| || || ||||| || || || || || || | || |||||||| Sbjct 1455406 AGAAGAAACCTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATATTCCAATA 1455465 Query 165501 CGCATCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGG 165560 || ||| | ||||| | ||||||||| | || || ||||||||||| || Sbjct 1455466 TGCTAGTTTC-------CTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTGGG 1455518 Query 165561 TATCTGGTTCACTGCTCTTGGT 165582 ||| ||||| || ||| ||||| Sbjct 1455519 TATTTGGTTTACCGCTTTTGGT 1455540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563463553948800