Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq207 116 2e-21 seq168 113 3e-20 seq6 111 1e-19 seq19 107 1e-18 seq1067 104 2e-17 seq420 98.7 6e-16 >seq207 Length=245090 Score = 116 bits (128), Expect = 2e-21 Identities = 168/235 (71%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 34754 TCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGA 34813 ||||||||| | | | |||| ||| | ||| || ||||| ||||| ||||| | Sbjct 172640 TCCTCCCCTGAGGCGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGC 172581 Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873 ||| |||| | || |||||||| ||||||||||| || || || |||||||| |||| Sbjct 172580 GAGGGTTCGGCCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGCGG 172521 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCT 34929 | ||||||||| || |||||| || || || | ||||| || || || Sbjct 172520 AATCCCCTCCTTATCCTGGATCTTCGCCTTCAC--AT--TGTCGATGGTGTCCGAGGACT 172465 Query 34930 CAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | || || | ||||||||| || ||||| || || ||||| ||||||||||| || Sbjct 172464 CGACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 172410 >seq168 Length=274740 Score = 113 bits (124), Expect = 3e-20 Identities = 154/213 (72%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || ||||| ||||| ||||| | ||| |||| | || || Sbjct 146860 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTTCGGCCGTCCTCA 146919 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| ||||| || || || | |||||||| | || | ||||||||||| | Sbjct 146920 AGCTGTTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCTTGA 146979 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| |||||| || ||||||| ||| | || || |||| ||| ||||| Sbjct 146980 ATCTTAGCTTTGAC--AT--TATCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATGGT 147035 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || |||||||| ||||| ||||||||||| Sbjct 147036 CTTGCCGGTGAGAGTTTTCACGAAGATCTGCAT 147068 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| ||||||||||||||| ||||| | ||| |||| |||| || Sbjct 146404 ACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGGCGAGGGTTCGGCCATCCTCG 146463 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || | || ||||||||| | || | ||||||||||| Sbjct 146464 AGCTGCTTACCGGCGAAGATCAATCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGG 146523 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | || | || || || | ||| |||||||| Sbjct 146524 ATCTTGGCTTTGACATTGTCAATGGTGTCGGAGCTTTCTACCTCCAAGGTGATGGTTTTC 146583 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| ||||| ||||| || ||||| Sbjct 146584 CCGGTGAGGGTCTTGACAAATATTTGCAT 146612 Score = 105 bits (116), Expect = 4e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||||||||| || || ||||| ||||| ||||| | ||| | ||| |||| Sbjct 146172 CAACACCAAGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGTCCATC 146231 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || || ||||| || ||||| || | | ||||||||| | || | ||||||||||| Sbjct 146232 CTCGAGTTGTTTGCCCGCAAAGATCAACCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTC 146291 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 |||||| ||||| | || | || | ||||| || | ||| ||||| Sbjct 146292 TTGAATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTTTCAACCTCCAAGGTGATGGT 146351 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| ||||||||||| ||||| |||||||| Sbjct 146352 CTTTCCGGTGAGAGTCTTAACAAAAATCTGCAT 146384 Score = 102 bits (112), Expect = 5e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| || | ||| || ||||| ||||| ||||| | ||| |||| | || || Sbjct 146632 ACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGCCCGTCCTCG 146691 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || |||||||| || |||| ||||||||| | || | ||||||||||| Sbjct 146692 AGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGG 146751 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || || |||||| | || | || | |||||| |||| ||| |||||||| Sbjct 146752 ATTTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCAACCTCGAGGGTGATGGTTTTC 146811 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| ||||| || ||||| ||||| Sbjct 146812 CCGGTGAGGGTCTTAACGAAGATTTGCAT 146840 >seq6 Length=1122688 Score = 111 bits (122), Expect = 1e-19 Identities = 165/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 34754 TCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGA 34813 |||||| || | | | ||||||||||| ||| || ||||| ||||| ||||| | Sbjct 399113 TCCTCCTCTGAGGCGGAGAACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 399172 Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873 ||| | || | || || ||||| |||||||| || || || || |||||||| | || Sbjct 399173 GAGGGTCCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGG 399232 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCT 34929 | ||||||||||| ||||| ||||| || | ||||| || || || Sbjct 399233 GATACCCTCCTTGTCTTGGATCTTGGCCTTGAC--AT--TGTCGATAGTGTCGGAGGACT 399288 Query 34930 CAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || | ||||||||| |||||||| || || ||||| ||||||||||| Sbjct 399289 CGACCTCCAAGGTTATGGTCTTTCCCGTTAGGGTTTTCACGAAGATCTGCAT 399340 >seq19 Length=713669 Score = 107 bits (118), Expect = 1e-18 Identities = 143/195 (73%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || || || | |||| | || |||| |||| ||| || |||||||| Sbjct 622870 TCCTTCTGGATATTGTAATCAGCAAGGGTGCGACCATCCTCCAACTGCTTCCCGGCAAAG 622929 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | |||||||||||| |||||| || || Sbjct 622930 ATCAGACGCTGCTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTTCGCCTTCAC---- 622985 Query 34911 GCTATCGAT--TCACCG-GC-CTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | | ||||| | ||| || |||||| |||| ||| || || || |||||||| ||||| Sbjct 622986 GTTGTCGATTGTGTCCGAGCTCTCAACCTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTT 623045 Query 34967 CACAAAGATCTGCAT 34981 |||||||||||||| Sbjct 623046 GACAAAGATCTGCAT 623060 Score = 84.2 bits (92), Expect = 1e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| || || | ||| | || | || || ||||| || ||||| || Sbjct 623782 TCCTTCTGGATGTTGTAATCGGCGAGGGTCCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 623841 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | |||||||||||| ||||| |||||| Sbjct 623842 ATCAGACGCTGCTGGTCCGGAGGAATCCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTG 623901 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||| || |||| || ||||| || || ||||| || || || Sbjct 623902 TCGATGGTGTCGGAGCTCTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTTTTGACG 623961 Query 34971 AAGATCTGCATATT 34984 |||||||||||||| Sbjct 623962 AAGATCTGCATATT 623975 >seq1067 Length=57296 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||| | || || | ||||| || ||| ||||| |||||||| |||| | Sbjct 37169 CCACCCCTCAGGCGCAGCACAAGGTGAAGGGTCGATTCCTTCTGGATGTTATAATCCGCA 37228 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | | |||| || |||||||| || || || || || || |||||||| | || Sbjct 37229 AGAGTCCTACCATCTTCGAGCTGTTTCCCAGCGAAAATCAGCCGCTGCTGGTCAGGGGGG 37288 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| |||||| |||||| | |||| || | ||| || Sbjct 37289 ATTCCCTCCTTGTCTTGAATCTTTGCCTTGACGTTATCAATCGTGTCTGAGCTCTCCACC 37348 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| ||||| ||||| || || ||||| ||||| |||||||| Sbjct 37349 TCAAGGGTGATGGTCTTTCCTGTAAGCGTCTTGACAAAAATCTGCAT 37395 >seq420 Length=153407 Score = 98.7 bits (108), Expect = 6e-16 Identities = 140/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | ||| | || | || || ||||| || ||||| || Sbjct 119131 TCCTTCTGGATGTTGTAGTCGGCGAGGGTCCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 119190 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| ||||| || || || Sbjct 119191 ATGAGGCGCTGCTGGTCCGGCGGGATTCCCTCCTTGTCCTGGATCTTGGTCTTCAC--AT 119248 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| || || |||||| |||| ||||||||| || ||||| || || || Sbjct 119249 --TGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTTATGGTCTTCCCCGTTAGGGTTTT 119306 Query 34967 CACAAAGATCTGCAT 34981 ||| ||||||||||| Sbjct 119307 CACGAAGATCTGCAT 119321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324522838566360