Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq716 174 2e-38 seq168 118 1e-21 seq2 96.9 4e-15 >seq716 Length=92840 Score = 174 bits (192), Expect = 2e-38 Identities = 206/279 (74%), Gaps = 0/279 (0%) Strand=Plus/Plus Query 84216 GCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCC 84275 ||||| |||||||| | || || || || || ||||| || ||||||||||| ||||| Sbjct 33918 GCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATATTATAGGTTTCT 33977 Query 84276 TCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATT 84335 || ||||||||||| ||||||| | || || |||||||||| |||| | || Sbjct 33978 TCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTTCCTTATC 34037 Query 84336 AGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCA 84395 | | ||| || || | |||||||| || ||| |||||| | || |||||||||||| Sbjct 34038 AAACTAGAGGTTACCAAGGAACCATGTATAGCACTGAATAGGGAGCCGCCGAATACACCA 34097 Query 84396 GCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGC 84455 || || || ||||| |||| || ||||||||||| | || || || || || |||| | Sbjct 34098 GCTACACCTAACATAAGAAATGGGTGCATAAGGATATAGTGCTCAGCTTGAAATACAATC 34157 Query 84456 ATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCA 84494 || ||||||| || | ||||| || || ||||| ||| Sbjct 34158 ATAAAGTTGAAAGTACTAGAGATTCCTAGAGGCATACCA 34196 >seq168 Length=274740 Score = 118 bits (130), Expect = 1e-21 Identities = 135/180 (75%), Gaps = 1/180 (1%) Strand=Plus/Minus Query 83987 GAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGTAC 84046 ||||||||| || |||||||| ||||| |||||||||||||| ||||| |||| | Sbjct 245413 GAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTAGCACGGTTAATGAT 245354 Query 84047 ATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTAAA 84106 || || ||||||| | ||||| || ||||| || | | |||||||| ||||| Sbjct 245353 ATTAACCTAGGTATTAATTACACGACCTTAACTATCAACTACAAATTGATTGAAATTAAA 245294 Query 84107 TCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACCAC 84166 ||||| | ||||| |||||| |||||| ||| | || || ||||||||| || || || Sbjct 245293 ACCATTTAAGTTAAAAGCCATGATGCTAATACCTAAAG-AGTAAACCAAATACCTACTAC 245235 >seq2 Length=1456787 Score = 96.9 bits (106), Expect = 4e-15 Identities = 106/142 (75%), Gaps = 7/142 (5%) Strand=Plus/Minus Query 84137 ACCCAGAGCAGCAAACCAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGA 84196 ||| | ||| | ||||||||| || || || ||||||||||| ||||| ||||| | ||| Sbjct 1455540 ACCAAAAGCGGTAAACCAAATACCCACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGA 1455481 Query 84197 ACGACTATTGTTGAAGGAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGC 84256 |||| ||| |||||| ||||| || | || || || || || |||||||| Sbjct 1455480 ACGA-------GGAAACTAGCATATTGGAATATCAATCGGCCAAAATAACCATGAGCAGC 1455428 Query 84257 AACAATATTATAAGTTTCCTCT 84278 ||||||||||| ||||| ||| Sbjct 1455427 TACAATATTATAGGTTTCTTCT 1455406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571073689944600