Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq8 87.8 2e-12 >seq8 Length=1027367 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||| | ||||| | || |||| | || |||||| ||||| ||| Sbjct 605790 CCCCCTTGATCAACATAACGAGCAGTGTCATTGAAAACCCGTAGCATTGGAACAATGCCA 605849 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || | |||||||||||| ||||||||| || | | | ||||| || || Sbjct 605850 TTAGACGTCCCATTGGTTCCCCGAATATAACTCCCTGTCGAACGAATATTGTGAACCGAG 605909 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| || | ||||||| || | ||| || || || Sbjct 605910 ACACCAATTCCTCCGGCTGATTTGCTAATAACAGCACACTCCTTCAAGGTGTCGTATATC 605969 Query 48540 CCTTCTATACTATCATCTATCAT 48562 ||||| || ||||||||| |||| Sbjct 605970 CCTTCAATGCTATCATCTTTCAT 605992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561912097051800