Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq264 190 2e-42 seq85 143 2e-28 seq657 113 4e-19 seq56 96.9 3e-14 seq114 91.5 1e-12 seq353 89.7 4e-12 seq343 87.8 1e-11 seq7127 86.0 5e-11 >seq264 Length=208598 Score = 190 bits (210), Expect = 2e-42 Identities = 458/686 (67%), Gaps = 8/686 (1%) Strand=Plus/Minus Query 551908 TAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTG 551967 ||||||||||||| || |||||||| | |||| ||||| | |||||||||| |||| Sbjct 83616 TAAGAACTGCTTGTGAGAGAGCCAAGAGGACTCTCTCATCAACTGCTCAAACCACCATTG 83557 Query 551968 AAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTG 552027 || | ||||| | || ||||| || |||| | ||| |||| | ||||| ||| | Sbjct 83556 AAATTGATTCTCTTTTCGAGGGCATCGATTTCTACACGACTATCACTCGGGCCCGATTCG 83497 Query 552028 AAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAG 552087 | || | |||||||| || || || || ||||| ||| || ||| || | Sbjct 83496 AGGAGCTCAACATGGATCTCTTCAGGAAGTGTATGGAGCCAGTGGAAAAATGTTTGAGGG 83437 Query 552088 ATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAA 552147 || | ||||| || || || || ||||| | || || |||||||| ||||| || | Sbjct 83436 ATGCTAAGATGGACAAGAGCAGTGTCCATGATGTGGTTCTAGTTGGTGGGTCTACTAGGA 83377 Query 552148 TTCCTAAAATTCGCGAAATGTT-AAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGT 552206 | ||||| ||| || |||| || ||| ||||||||| || | | || ||| Sbjct 83376 TCCCTAAGGTTCAACAATTGTTGCAGGACTT-TTTCAATGGAAAGGAGCT--GTGCAAGA 83320 Query 552207 G--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTG 552264 | | || || || ||||| ||||| ||||||||||| | || ||||| || ||| | Sbjct 83319 GCATCAACCCCGACGAGGCAGTTGCTTATGGTGCCGCTGTCCAGGCAGCAATCCTTAGCG 83260 Query 552265 GACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTG 552324 | | | | || || | ||| | || | | ||||||| |||||||| || |||| Sbjct 83259 GTGAGGGTAACGAGAAGGTGCAAGACCTTCTGTTGTTAGATGTCACTCCTCTGTCCCTTG 83200 Query 552325 GTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTT 552384 | || ||||| | |||||| | ||||| || || ||||| || || || ||| Sbjct 83199 GATTGGAAACTGCAGGAGGTGTGATGACAGTACTAATTCCAAGAAACACCACAATCCCTA 83140 Query 552385 GTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAA 552444 || ||| | || || || || ||||| ||||| ||| ||| ||| || ||| Sbjct 83139 CCAAGAAAGAGCAGGTGTTCTCCACCTATTCCGATAACCAACCTGGTGTGCTGATCCAAG 83080 Query 552445 TTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAG 552504 | | || || ||| || || || || || || || || | ||| | | Sbjct 83079 TGTACGAGGGTGAACGAGCTAGAACCAAGGACAACAACTTGCTCGGCAAATTTGAGCTCT 83020 Query 552505 AAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGT-TACTTTCGATATCGAT 552563 || ||||||||||||||| | ||||| || ||||| | || | |||| || || ||| Sbjct 83019 CTGGCATTCCTCCTGCTCCTAGAGGAGTTCCACAAATCAATGTCTGCTTT-GACATTGAT 82961 Query 552564 GCCAATGGAATTTTGAATGTGACTGC 552589 || ||||| || ||||| || |||| Sbjct 82960 GCAAATGGTATCTTGAACGTCTCTGC 82935 >seq85 Length=391096 Score = 143 bits (158), Expect = 2e-28 Identities = 441/674 (65%), Gaps = 6/674 (1%) Strand=Plus/Plus Query 551913 ACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTA 551972 ||||||||||| ||||| || | |||| ||||| | | ||||||||||| ||| | Sbjct 94255 ACTGCTTGCGAGAGAGCGAAGAGGACTCTGTCATCCACTGCCCAAACCACTATCGAAATT 94314 Query 551973 GATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGAT 552032 ||||| | | |||||| ||||||| | | || ||| | | || | |||||| || Sbjct 94315 GATTCTCTCTATGAGGGTATTGATTTCTACTCACCCATTACCCGTGCTAGATTTGAGGAG 94374 Query 552033 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGT-TTTAAGAGATTC 552091 | ||||| || || || || || || || | | |||| ||| |||||| | Sbjct 94375 CTCAACATGGATCTATTCAGGAAGTGTATGGAGCCCGT-GGAGAAGTGTTTGAGAGATGC 94433 Query 552092 AAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCC 552151 ||||| || || || || ||||| |||| ||||| || || || || |||||||| Sbjct 94434 TAAGATGGACAAGAGCACTGTTCATGATGTTGTTCTTGTCGGAGGTTCAACCAGAATTCC 94493 Query 552152 TAAAATTCGCGAAATGTT-AAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTA 552210 || ||| | |||| || ||| ||||| || || | | | ||| | | Sbjct 94494 CAAGGTTCAGCAGCTGTTGCAGGACTT-CTTCAACGGAAAGGAGCTCTGCAAGAGTATCA 94552 Query 552211 ATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAA 552270 | |||||||||||||||||||| ||||| || | || || ||||| | || || Sbjct 94553 ACCCAGATGAGGCTGTTGCCTACGGTGCTGCTGTCCAGGCTGCTATCTTGAGCGGTGAAG 94612 Query 552271 CTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAG 552330 |||| || | || || | | || | |||||||||||||| ||||||||||| | Sbjct 94613 GAAATGAGAAGGTTCAGGATCTGTTGCTGTTGGATGTTACTCCTCTGTCTCTTGGTTTGG 94672 Query 552331 AAACAGTTGGAGGTATTATGACTAATCTT-ATCGATAGAAATACTACTATTCCTTGTAAA 552389 | || | ||||||| ||||||| |||| || || || || ||||| || || Sbjct 94673 AGACTGCTGGAGGTGTTATGAC-CGTCTTGATTCCCAGGAACACAACTATCCCGACCAAG 94731 Query 552390 AAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTT 552449 || | || || ||||| || ||||| || || | | ||| || || ||| Sbjct 94732 AAGGAGCAAGTGTTCTCTACCTACTCAGACAACCAGCCCGGTGTGCTTATCCAGGTTTAC 94791 Query 552450 GAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGT 552509 || || || ||| || | || || |||| || |||| || | | || Sbjct 94792 GAGGGTGAGAGAGCTAGAACCAGGGACAACAATCTGCTGGGTAAATTCGAGCTTTCTGGC 94851 Query 552510 ATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAAT 552569 ||||| || ||||| | || || || || || ||| ||||||||| ||||| || Sbjct 94852 ATTCCACCGGCTCCCAGAGGTGTTCCTCAGATCACTGTTTGTTTCGATATTGATGCTAAC 94911 Query 552570 GGAATTTTGAATGT 552583 || ||| ||||||| Sbjct 94912 GGTATTCTGAATGT 94925 >seq657 Length=102741 Score = 113 bits (124), Expect = 4e-19 Identities = 443/682 (65%), Gaps = 16/682 (2%) Strand=Plus/Minus Query 551910 AGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAA 551969 |||||||||||||| || ||||| || |||| || || |||||||||||||||||| Sbjct 15188 AGAACTGCTTGCGAGAGGGCCAAGAGAACTCTGTCTTCCACCACTCAAACCACTATTGAA 15129 Query 551970 GTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAA 552029 | ||||| | | || || || |||| | || | ||| | || || | ||| ||| Sbjct 15128 ATCGATTCGCTCTACGAAGGGATCGATTTCTACTCGACAATTACTAGAGCTAGATTCGAA 15069 Query 552030 GATATTTGTTC--TGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGT-TTTAAGA 552086 | | ||| | || | |||||||| || || || || | | |||| | | || Sbjct 15068 G--AGTTGAACATGGACTTGTTTAGAAAGTGTATGGAGCCTGT-GGAGAAGTGTCTGAGG 15012 Query 552087 GATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGA 552146 ||||| |||||||| || | |||| ||||| | || ||||| || || || || || Sbjct 15011 GATTCGAAGATTGACAAGAGCCAAGTTCATGACGTGGTTCTTGTCGGCGGGTCGACCAGG 14952 Query 552147 ATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGT 552206 ||||| ||| ||| || |||| || |||||| || || || | || ||| Sbjct 14951 ATTCCGAAAGTTCAGCAACTGTTGGAGGATTTTTTCAACGGCAAGGAACT--TTGCAAGA 14894 Query 552207 G--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTG 552264 | | || || || ||||| ||||| || || || ||| | ||||| || | |||| Sbjct 14893 GCATAAACCCCGACGAGGCCGTTGCTTACGGCGCAGCAGTACAAGCCGCGA-TCTTGAGC 14835 Query 552265 GACAAACTGATGAA-AAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTT 552323 | || || || ||| | ||| | | | || | ||||| || |||||| || Sbjct 14834 GGTGAAGGGAACAAGAAAGTCCAAGACTTGCTTCTACTCGATGTCACGCCTCTAAGCCTC 14775 Query 552324 GGTTTAGAAACAGTTGGAGGTATTATGACTAATCTT-ATCGATAGAAATACTACTATTCC 552382 || | ||||| | || || | |||||| |||| ||| ||||| || || ||||| Sbjct 14774 GGAATCGAAACTGCCGGCGGGGTAATGACT-GTCTTGATCCCGAGAAACACGACAATTCC 14716 Query 552383 TTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCA 552442 | ||||| | | || || || || || || || || | | || |||||| Sbjct 14715 TACGAAAAAGGAGCAGATTTTCTCGACATACTCGGACAACCAGCCGGGAGTACTAATTCA 14656 Query 552443 AATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTT 552502 | | |||||| || || || |||||||| || | ||||| | ||| | | Sbjct 14655 GGTGTATGAAGGTGAGAGGGCTAGAACCAAAGATAACAACCTTCTTGGGAAATTTGAGCT 14596 Query 552503 AGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGT-TACTTTCGATATCG 552561 || || || || || ||| | || || || || || | || | |||| || |||| Sbjct 14595 CACTGGCATCCCACCGGCACCTAGAGGCGTTCCTCAGATCAATGTATGCTTT-GACATCG 14537 Query 552562 ATGCCAATGGAATTTTGAATGT 552583 |||| || |||||| | ||||| Sbjct 14536 ATGCGAACGGAATTCTCAATGT 14515 >seq56 Length=474593 Score = 96.9 bits (106), Expect = 3e-14 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 || || || || || || |||||||| ||| | ||| || ||||||||||| |||||| Sbjct 373716 ACCGTGCCTGCGTACTTCAATGACTCTCAAAGAACAGCAACAAAAGATGCTGGTCGTATT 373657 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 ||||| | | |||||||||||||| || ||||| ||||||||| || | || || || Sbjct 373656 GCTGGTTTAGAGGTTCTTCGTATTATAAACGAACCAACTGCTGCTTCATTGGCTTACGGG 373597 Query 550529 CTTGATAA 550536 |||| || Sbjct 373596 TTTGAGAA 373589 >seq114 Length=338572 Score = 91.5 bits (100), Expect = 1e-12 Identities = 147/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 390803 CAGTATTAATACCATTATCACCATATACACATTGAATTA-ATTTGTCATTGGCATTTCTT 390861 ||| || || |||| || ||||| | | ||||||| | || || || ||||||| Sbjct 177446 CAGAATCCATTCCATCTTCCCCATAGAGAAATTGAATAACATCCCCCAATGA-ATTTCTT 177504 Query 390862 ACGGTACCATCATACTCTACTTTAATGTCTTCTAACATTTTAACTAATTTTCTTTGGATA 390921 ||||| |||||||| | || |||| || || | ||| || | | | | ||||| Sbjct 177505 ACGGTCCCATCATATTTGACCATAATATCCTCCATAGCTTTCACCAGTCTCCGCTGGATG 177564 Query 390922 TAACCAGTGTCTGCAGTTTTAATTGCAGTATTAATAATACCTTCTCTTCCTGCCATAACT 390981 || || || || | |||||| | |||||||| |||| ||||||||| || ||||| | Sbjct 177565 TACCCGGTCTCAGAAGTTTTCACTGCAGTATCTATAAGACCTTCTCTACCACCCATAGCG 177624 Query 390982 TGGAAGAAAAATTCCATAGGATTGAGTCC 391010 |||||||| || ||| ||| | ||||| Sbjct 177625 TGGAAGAAGAACTCCTGCGGAGTCAGTCC 177653 Score = 91.5 bits (100), Expect = 1e-12 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 393991 TTCAATGTTATGTTTTGTCACAATTTCATCAAATGTTAAATTCATTGCAATAATTTGTGG 394050 ||||||||||| | |||||| | || | |||| | ||| | ||||||| | ||| Sbjct 179570 TTCAATGTTATATGGTGTCACGGTCTCTGGATATGTAAGATTTAATGCAATACTCCATGG 179629 Query 394051 TAGTCCCACTTCATTAAGAGCAATATTTGGATCCGAGGTAATAACTGTACGACCTGACAT 394110 | ||| | ||||| || ||| ||||||| | ||| ||||||||||| | || | Sbjct 179630 CACTCCTAATTCATCAATGTTAATGGTTGGATCAGGGGTGATAACTGTACGTGCAGAAAA 179689 Query 394111 ATCCACACGTTTTCCCATAAGATTTCCACGAATTCTACCTTCTTT 394155 |||||||||||| ||||| | || || | ||||| |||||| || Sbjct 179690 ATCCACACGTTTCCCCATCAAGTTCCCTCTAATTCGACCTTCCTT 179734 >seq353 Length=174248 Score = 89.7 bits (98), Expect = 4e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || || || || || ||||| ||||| | ||| | ||||| || ||||||||| Sbjct 14585 GCTGTTATTACGGTTCCGGCTTATTTCAATGATGCCCAAAGACAAGCAACAAAAGATGCT 14526 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || | ||||| || ||| |||| | | ||||||||||| || ||||||||||| ||| Sbjct 14525 GGCAGAATTGCAGGCCTTGATGTGCAGAGGATTATCAATGAGCCAACTGCTGCTGCCCTT 14466 Query 550520 GCATATGGA 550528 | || ||| Sbjct 14465 TCTTACGGA 14457 >seq343 Length=177656 Score = 87.8 bits (96), Expect = 1e-11 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 563266 ACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCA 563325 || |||||||| || || || ||| |||||||| || ||||| || |||||| Sbjct 100727 ACCAGATGAAGAGTTGACTCCTTCTGAATGTTGTAATCCGCAAGAGTCCTCCCATCTTCC 100786 Query 563326 AGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGA 563385 | ||| || || |||||||| | ||| |||||||| |||||||||||||| || || ||| Sbjct 100787 AATTGCTTCCCAGCAAAAATCAATCTCTGCTGATCCGGAGGAATTCCTTCCTTGTCCTGA 100846 Query 563386 A 563386 | Sbjct 100847 A 100847 >seq7127 Length=1239 Score = 86.0 bits (94), Expect = 5e-11 Identities = 265/403 (66%), Gaps = 8/403 (2%) Strand=Plus/Plus Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014 ||||| || ||||| | ||||| | | |||||| ||||||| | | || ||| | Sbjct 12 CAAACTACCATTGAGATTGATTCTCTCTATGAGGGTATTGATTTCTACTCCCCCATTACC 71 Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAA 552074 | || | |||||| || | || ||||| || || || || || || || Sbjct 72 CGTGCTAGATTTGAGGAGCTCAACATGGACCTCTTCAGGAAGTGTATGGAGCCCGTTGAG 131 Query 552075 CAAGT-TTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGG 552133 |||| ||| || ||| | ||||| || || || || || || |||| |||||||| Sbjct 132 -AAGTGTTTGAGGGATGCCAAGATGGACAAGAGCACTGTTCACGATGTTGTCCTTGTTGG 190 Query 552134 TGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAA 552192 ||| || || |||||||| || | | || | || || ||| || |||||| || Sbjct 191 TGGCTCCACCAGAATTCCCAAGGTCCAACAACTATTGCAGGACTTCTT-CAATGGAAAGG 249 Query 552193 AATTAAATGAAAGTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGC 552250 | | || ||| | |||| || ||||||||||| || |||||||| || |||| || Sbjct 250 AGCTT--TGCAAGAGCATTAACCCCGATGAGGCTGTCGCTTATGGTGCTGCTGTTCAGGC 307 Query 552251 AGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTAC 552310 |||||| | ||| || | || || | || | | | ||| | ||||| || Sbjct 308 TGCTATTTTGAGTGGTGAAGGAAACGAGAAGGTTCAGGACTTGTTGCTTTTGGATGTCAC 367 Query 552311 TCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACT 552353 ||||| |||| ||||| || || | ||| ||| | |||||| Sbjct 368 CCCTCTGTCTCAAGGTTTGGAGACCGCTGGTGGTGTCATGACT 410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027815498142550