Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq716 154 4e-33 seq168 86.0 2e-12 >seq716 Length=92840 Score = 154 bits (170), Expect = 4e-33 Identities = 208/285 (73%), Gaps = 6/285 (2%) Strand=Plus/Plus Query 36213 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 36272 || ||||| |||||||| | || ||||| || |||||||| || ||||| ||||| || Sbjct 33915 CTCGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATATTATAGGTT 33974 Query 36273 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 36332 ||||| ||||| |||||| | || || | || ||||||| | || |||| | Sbjct 33975 TCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTTCCTT 34034 Query 36333 AT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAAT 36389 || || | |||| || |||| || || |||||| ||||| | || |||||| Sbjct 34035 ATCAAACTAGAGGT--TACCAAGGAA-CCATGTATAGCACTGAATAGGGAGCCGCCGAAT 34091 Query 36390 ACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAG 36449 || || || ||||| | |||| | || || ||||||||||||| ||| || || ||||| Sbjct 34092 ACACCAGCTACACCTAACATAAGAAATGGGTGCATAAGGATATAGTGCTCAGCTTGAAAT 34151 Query 36450 ACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCA 36494 |||| |||||| |||||||| | || || || |||||||||||| Sbjct 34152 ACAATCATAAAGTTGAAAGTACTAGAGATTCCTAGAGGCATACCA 34196 >seq168 Length=274740 Score = 86.0 bits (94), Expect = 2e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 35968 CAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTA 36027 |||| |||||||| || | |||||| || || ||||| ||||||||||||||||| || | Sbjct 245432 CAGCCGCTAGGTCTAGAGAGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAA 245373 Query 36028 AGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGA 36087 | |||||||||| || | | || | || | || | || | |||||| | Sbjct 245372 GATTAGCACGGTTAATGATATTAACCTAGGTATTAATTACACGACCTTAACTATCAACTA 245313 Query 36088 CTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCAT 36127 | | |||||||| ||||| || || | ||||||||||| Sbjct 245312 CAAATTGATTGAAATTAAAACCATTTAAGTTAAAAGCCAT 245273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150404382845230