Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq716 161 3e-35 seq168 96.9 1e-15 seq90 82.4 2e-11 >seq716 Length=92840 Score = 161 bits (178), Expect = 3e-35 Identities = 205/282 (73%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 5435 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTT 5494 || ||||| |||||||| | || ||||| || |||||||| || ||||| ||||| ||| Sbjct 33915 CTCGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATATTATAGGTT 33974 Query 5495 TCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGA 5554 ||||||||||| |||||| | || || | || ||| | | || |||| | Sbjct 33975 TCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTTCCTT 34034 Query 5555 ATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACC 5614 || | ||| || || | ||||| |||||| ||| | | || |||||||| Sbjct 34035 ATCAAACTAGAGGTTACCAAGGAACCATGTATAGCACTGAATAGGGAGCCGCCGAATACA 34094 Query 5615 CCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACG 5674 ||||| ||||| | ||| | || || ||||||||||||| ||| || || || ||||| Sbjct 34095 CCAGCTACACCTAACATAAGAAATGGGTGCATAAGGATATAGTGCTCAGCTTGAAATACA 34154 Query 5675 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCA 5716 | ||||||||| ||||||| |||||| || |||||||||||| Sbjct 34155 ATCATAAAGTTGAAAGTACTAGAGATTCCTAGAGGCATACCA 34196 >seq168 Length=274740 Score = 96.9 bits (106), Expect = 1e-15 Identities = 136/190 (72%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 5190 CAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAA 5249 |||| ||||| || || | |||||| |||||||| ||||| ||||| ||||||||||||| Sbjct 245432 CAGCCGCTAGGTCTAGAGAGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAA 245373 Query 5250 GGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGA 5309 | || |||||||| | || || || | || || | | ||| | ||||| | Sbjct 245372 GATTAGCACGGTTAATGATATTAACCTAGGTATTAATTACACGACCTTAACTATCAACTA 245313 Query 5310 CTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGG 5369 | | |||||||| ||||| || || | ||||||||||| || || || | ||| | Sbjct 245312 CAAATTGATTGAAATTAAAACCATTTAAGTTAAAAGCCATGATGCTAATACCTAAAGA-G 245254 Query 5370 TAAGCCATAT 5379 ||| ||| || Sbjct 245253 TAAACCAAAT 245244 >seq90 Length=380041 Score = 82.4 bits (90), Expect = 2e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 6008 TAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCT 6067 || ||||||||||| | || |||||| | || || || || || ||||| || | ||| Sbjct 122967 TAAAGTAGAGATCCAGAAACAGGTTCATGAATACCATCAATATCTACTGGAGGGGTAGCA 122908 Query 6068 ACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCA 6127 | ||| || | |||||| ||| ||||||||| || | || ||||| || |||||| Sbjct 122907 ATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAAATAGGGATCATCAAAACACCA 122848 Query 6128 AACCACCCCACATAGAGGCGGTT 6150 ||||| || | || || ||||| Sbjct 122847 AACCATCCAATGTAAAGACGGTT 122825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152598853071570