Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq716 154 4e-33 seq168 82.4 2e-11 seq2 80.6 8e-11 >seq716 Length=92840 Score = 154 bits (170), Expect = 4e-33 Identities = 208/285 (73%), Gaps = 6/285 (2%) Strand=Plus/Plus Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 || ||||| |||||||| | || ||||| || |||||||| || ||||| ||||| || Sbjct 33915 CTCGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATATTATAGGTT 33974 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 25812 ||||| ||||| |||||| | || || | || ||||||| | || |||| | Sbjct 33975 TCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTTCCTT 34034 Query 25813 AT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAAT 25869 || || | |||| || |||| || || |||||| ||||| | || |||||| Sbjct 34035 ATCAAACTAGAGGT--TACCAAGGAA-CCATGTATAGCACTGAATAGGGAGCCGCCGAAT 34091 Query 25870 ACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAG 25929 || || || ||||| | |||| | || || ||||||||||||| ||| || || ||||| Sbjct 34092 ACACCAGCTACACCTAACATAAGAAATGGGTGCATAAGGATATAGTGCTCAGCTTGAAAT 34151 Query 25930 ACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCA 25974 |||| |||||| |||||||| | || || || |||||||||||| Sbjct 34152 ACAATCATAAAGTTGAAAGTACTAGAGATTCCTAGAGGCATACCA 34196 >seq168 Length=274740 Score = 82.4 bits (90), Expect = 2e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| |||| |||||| || || ||||| ||||||||||||||||| || | | Sbjct 245427 GCTAGGTCTAGAGAGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 245368 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||||| || | | || | || | || | || | |||||| || | Sbjct 245367 GCACGGTTAATGATATTAACCTAGGTATTAATTACACGACCTTAACTATCAACTACAAAT 245308 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCAT 25607 |||||||| ||||| || || | ||||||||||| Sbjct 245307 TGATTGAAATTAAAACCATTTAAGTTAAAAGCCAT 245273 >seq2 Length=1456787 Score = 80.6 bits (88), Expect = 8e-11 Identities = 100/136 (74%), Gaps = 7/136 (5%) Strand=Plus/Minus Query 25623 AGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCT 25682 |||||||| ||| || | || ||||||||||| | |||||| |||||| ||| Sbjct 1455534 AGCGGTAAACCAAATACCCACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACG--- 1455478 Query 25683 ATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAAT 25742 | ||| |||||||| ||||| || | || ||||| || |||||||| || ||||| Sbjct 1455477 ---AGGAAA-CTAGCATATTGGAATATCAATCGGCCAAAATAACCATGAGCAGCTACAAT 1455422 Query 25743 GTTATACGTCTCTTCT 25758 ||||| || |||||| Sbjct 1455421 ATTATAGGTTTCTTCT 1455406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151943071152620