Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq19 116 3e-21 seq343 102 6e-17 >seq19 Length=713669 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | || | |||||| || || || || || ||||| |||||| Sbjct 623290 CCTCCACGGAGACGGAGCACCAGATGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGCG 623349 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||| | | || |||| ||||| || || || |||| |||||| || || || ||| Sbjct 623350 AGGGTTCGGCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGA 623409 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| ||||| || || || || || | || | ||||| || | ||||| Sbjct 623410 ATCCCTTCCTTATCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCCACC 623469 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| ||| || ||||||| ||||| |||||||||||||| Sbjct 623470 TCCAGGGTGATCGTCTTTCCGGTTAGGGTTTTCACAAATATCTGCAT 623516 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || |||||||| || || || ||||||||||| || | || | |||| ||||| ||| Sbjct 622858 TGGAGGGTAGACTCCTTCTGGATATTGTAATCAGCAAGGGTGCGACCATCCTCCAACTGC 622917 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| |||| |||||| || || || ||||| || || || || || || || Sbjct 622918 TTCCCGGCAAAGATCAGACGCTGCTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTTC 622977 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | ||||| || | || || || || |||| ||| ||||| || Sbjct 622978 GCCTTCACGTTGTCGATTGTGTCCGAGCTCTCAACCTCGAGGGTGATCGTCTTGCCCGTG 623037 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 623038 AGGGTCTTGACAAAGATCTGCAT 623060 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | || | ||| || ||||| || || || || |||||||||||| Sbjct 623746 CCTCCACGGAGACGAAGGACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGCG 623805 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | | || || | ||||| || || || |||| |||||| || || || ||| Sbjct 623806 AGGGTCCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGA 623865 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || || ||||| || || || || | || | ||||| || | || || Sbjct 623866 ATCCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACC 623925 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||||| || |||||||| | ||||| || || |||||||| Sbjct 623926 TCGAGAGTGATGGTCTTGCCGGTGAGGGTTTTGACGAAGATCTGCAT 623972 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| || || || || || || || ||||||||||||| || | | || ||||| || Sbjct 623541 ATGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGACCGTCCTCCAACTG 623600 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || || || |||| | ||| || || ||||| || ||||| ||||| || || || Sbjct 623601 CTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGCGGGATTCCTTCCTTATCCTGGATCTT 623660 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || || | || | |||||||| | || ||||| || || | ||| || ||||| Sbjct 623661 GGCCTTGACGTTGTCGATCGTGTCAGAGCTCTCGACTTCTAGGGTTATCGTCTTACCGGT 623720 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 || ||||| || || |||||||| Sbjct 623721 TAGGGTTTTGACGAAGATCTGCAT 623744 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || || || || || ||||||||||||| || | | | || || | ||| Sbjct 628731 TGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTCCGGCCGTCTTCGAGCTGC 628790 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || |||| |||||| || || ||||| || ||||| || || || || || Sbjct 628791 TTTCCAGCGAAGATCAGACGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCCTGGATCTTG 628850 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | ||||| || | || || || ||||| | || ||||||||| Sbjct 628851 GCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGAGTTATGGTCTTGCCGGTT 628910 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||||| || || |||||||| Sbjct 628911 AGGGTTTTGACGAAGATCTGCAT 628933 >seq343 Length=177656 Score = 102 bits (112), Expect = 6e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| || | | ||||| | |||||| || || || || || || |||||||| | Sbjct 100707 TTCCTCCCCTAAGCCTCAAAACCAGATGAAGAGTTGACTCCTTCTGAATGTTGTAATCCG 100766 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | ||| || |||| ||||||||||| || ||||| ||||| | ||| ||||| || | Sbjct 100767 CAAGAGTCCTCCCATCTTCCAATTGCTTCCCAGCAAAAATCAATCTCTGCTGATCCGGAG 100826 Query 101361 GAATGCCTTCTTTATCTTGAA 101381 |||| ||||| || || |||| Sbjct 100827 GAATTCCTTCCTTGTCCTGAA 100847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396143194144215