Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq19 95.1 9e-15 seq1067 91.5 1e-13 seq168 89.7 4e-13 seq6 89.7 4e-13 seq4 84.2 2e-11 >seq19 Length=713669 Score = 95.1 bits (104), Expect = 9e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || ||||||||||||| || | ||| | || ||||||||||| |||||||| Sbjct 622869 CTCCTTCTGGATATTGTAATCAGCAAGGGTGCGACCATCCTCCAACTGCTTCCCGGCAAA 622928 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 ||||| ||||| || |||| |||| ||||||||||| ||||| || || Sbjct 622929 GATCAGACGCTGCTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTTCGCCTTCACGTT 622988 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || ||| ||||| | || ||||| || ||||| | || || || Sbjct 622989 GTCGATTGTGTCCGAGCTCTCAACCTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTGAC 623048 Query 48755 AAAAATCTGCAT 48766 ||| |||||||| Sbjct 623049 AAAGATCTGCAT 623060 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| ||| || |||||||| || || || ||||| || | || | ||| Sbjct 623071 AGACGGAGCACCAGATGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCCGCGAGGGTGCGA 623130 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | ||| || ||||| || || || | ||| || |||| ||||| || ||| Sbjct 623131 CCGTCCTCAAGCTGTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGGGGGAATACCTTCC 623190 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| ||| || | | | || || ||| ||||| | || Sbjct 623191 TTGTCCTGGATCTTGGCTTTCACGTTGTCGATGGTGTCGGAGCTCTCGACCTCAAGGGTG 623250 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||||| || || || | ||||| ||||||||||||||| Sbjct 623251 ATCGTCTTGCCGGTGAGGGTTTTCACAAAAATCTGCATC 623289 >seq1067 Length=57296 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || ||||| |||||||||| | | | | | || ||||||||| Sbjct 36965 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCCAAAGTCCTTCCATCCTCCAACTGC 37024 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || ||||| |||| | ||| || || | || | |||||||||||| ||| || Sbjct 37025 TTCCCTGCAAAAATCAACCTCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGAATTTTC 37084 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | |||| || || ||||||||||| || ||||| || || ||| Sbjct 37085 GCCTTCACATTGTCGACAGTGTCCGAGCTCTCCACCTCCAAGGTGATCGTCTTCCCAGTC 37144 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 || || || || || |||||||| Sbjct 37145 AAGGTCTTCACGAAGATCTGCAT 37167 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || |||| ||| | || || || || || || || || ||||| | Sbjct 37168 GCCACCCCTCAGGCGCAGCACAAGGTGAAGGGTCGATTCCTTCTGGATGTTATAATCCGC 37227 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | | | | || || | ||| || || || || ||||| ||||| || || | ||| Sbjct 37228 AAGAGTCCTACCATCTTCGAGCTGTTTCCCAGCGAAAATCAGCCGCTGCTGGTCAGGGGG 37287 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||||||||||| ||||||| || || | | | | ||||| |||||| Sbjct 37288 GATTCCCTCCTTGTCTTGAATCTTTGCCTTGACGTTATCAATCGTGTCTGAGCTCTCCAC 37347 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| | || || || ||||| || | || || |||||||||||||| Sbjct 37348 CTCAAGGGTGATGGTCTTTCCTGTAAGCGTCTTGACAAAAATCTGCAT 37395 >seq168 Length=274740 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || ||| ||| || || || ||||| |||| || |||| Sbjct 146851 AGGCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTTCGG 146910 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | ||| || ||||| || ||||| | ||| || |||| || | |||||| Sbjct 146911 CCGTCCTCAAGCTGTTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGTGGGATACCCTCC 146970 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| ||| ||| | | | | || || |||||||| | || Sbjct 146971 TTGTCTTGAATCTTAGCTTTGACATTATCGATGGTGTCAGAGCTTTCCACCTCGAGGGTG 147030 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || || || || | |||||| || || ||||||||| Sbjct 147031 ATGGTCTTGCCGGTGAGAGTTTTCACGAAGATCTGCATC 147069 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || ||| ||||| ||||| ||||| || | || |||| Sbjct 146395 AGACGGAGCACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGGCGAGGGTTCGG 146454 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||||||||| || |||| || ||| || || | ||| | ||||||| Sbjct 146455 CCATCCTCGAGCTGCTTACCGGCGAAGATCAATCTCTGCTGGTCTGGGGGGATGCCCTCC 146514 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| ||| ||| | | | || || || ||||||| || Sbjct 146515 TTGTCCTGGATCTTGGCTTTGACATTGTCAATGGTGTCGGAGCTTTCTACCTCCAAGGTG 146574 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || | || || ||||| || ||||| Sbjct 146575 ATGGTTTTCCCGGTGAGGGTCTTGACAAATATTTGCAT 146612 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| || ||| ||| || || || ||||| || | || |||| Sbjct 146623 AGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGC 146682 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||| |||||||| || |||| ||| || || | ||| | ||||||| Sbjct 146683 CCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGGTCTGGGGGGATGCCCTCC 146742 Query 48669 TTGTC 48673 ||||| Sbjct 146743 TTGTC 146747 >seq6 Length=1122688 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || | ||||| || |||||| ||| || || || ||||| || | Sbjct 399114 CCTCCTCTGAGGCGGAGAACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCG 399173 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || |||| || | |||||| ||||| || ||||| ||||| || || | || Sbjct 399174 AGGGTCCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGG 399233 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| ||||| || ||| | | || || || | ||| ||| Sbjct 399234 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATAGTGTCGGAGGACTCGACC 399293 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || |||||||| | ||||| || || |||||||| Sbjct 399294 TCCAAGGTTATGGTCTTTCCCGTTAGGGTTTTCACGAAGATCTGCAT 399340 >seq4 Length=1210416 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 9094 TGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTCGGAATGATTGAACAGCACC 9153 ||||||||||| || |||| |||| |||| || || ||||| |||||||| | Sbjct 1168391 TGAGCAATCCTATCGCCCTCTCTCACTTCAAAATCCACATCCGAATGGTTGAACAGAATG 1168332 Query 9154 ACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGC 9213 || || ||| ||| || ||||| ||||||||||||| || || || ||||| ||||| Sbjct 1168331 ACCCCAACGGAACCTCTATAATCAGCATCGATCACACCCGCTCCGACATCGATCGAGTGC 1168272 Query 9214 TTGACCGCTAGTCCAGAGCGGGGCGC 9239 || ||| | || || || ||||| Sbjct 1168271 TTCCACGCCAAACCTGACCGAGGCGC 1168246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380807628257385