Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq1 212 7e-50 seq716 149 7e-31 seq257 138 1e-27 seq168 105 8e-18 >seq1 Length=1764766 Score = 212 bits (234), Expect = 7e-50 Identities = 251/340 (74%), Gaps = 0/340 (0%) Strand=Plus/Minus Query 165285 GAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCG 165344 ||||| |||||||| ||||| || || |||||||| ||||| || ||||| || |||| Sbjct 983291 GAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCT 983232 Query 165345 TTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGG 165404 ||||| || || | ||| | ||||| || ||||| ||||| || || | ||| | ||| Sbjct 983231 TTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGG 983172 Query 165405 ACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGT 165464 | || |||| | | ||||| ||| | || || ||||| || || ||||| | Sbjct 983171 ATGAGTGCTTTTGGAGTAGTCGGTCTGGCTTTGAATCTACGTGCCTATGACTTCGTTTCT 983112 Query 165465 CAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTA 165524 || || ||| | ||||| |||||||| ||||||||||| | |||||||||||| || || Sbjct 983111 CAAGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTGCTACACCAAAAATATTCTC 983052 Query 165525 TTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATC 165584 || || || || | ||||||||| |||| || ||||| || |||||||||||||| Sbjct 983051 TTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACTTTATA 982992 Query 165585 TTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 165624 ||||| || || || | || | || ||||| ||||||| Sbjct 982991 TTCCCTGAGGAGGTTCTATCTCGTGGAAACGCTCTTTAAT 982952 >seq716 Length=92840 Score = 149 bits (164), Expect = 7e-31 Identities = 198/275 (72%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 163357 ATGCCACTTGGCATCTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAAC 163416 ||||| || || |||||| | || ||||||| ||| |||| || ||||| |||||| | Sbjct 34192 ATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTTCAAGCTGAGCACTAT 34133 Query 163417 ATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACTCTTC 163476 ||||| |||||||| || | |||||| || || |||||||| ||||| || || || ||| Sbjct 34132 ATCCTTATGCACCCATTTCTTATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTC 34073 Query 163477 TCGGCAATGCATGGCAGTCTTGTTACCTCTTCACTCGTCCGTGAGACGACTGAAACTGAG 163536 || || ||||| | || |||||| | | | | || || |||| ||| Sbjct 34072 AGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTGATAAGGAAAACCACAGAAAATGAA 34013 Query 163537 TCACAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACATACAACATCGTTGCAGCA 163596 || || | ||||||| || |||||||| ||||| || || || || || || || Sbjct 34012 TCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGCCGCT 33953 Query 163597 CATGGCTACTTCGGTCGTTTGATCTTCCAATATGC 163631 ||||| || || || || ||||||||||||||||| Sbjct 33952 CATGGTTATTTTGGCCGATTGATCTTCCAATATGC 33918 >seq257 Length=213233 Score = 138 bits (152), Expect = 1e-27 Identities = 243/352 (69%), Gaps = 4/352 (1%) Strand=Plus/Minus Query 164988 AATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCA 165047 ||||| || || ||||| | ||| |||| ||||||||| || ||||| || || ||| Sbjct 14485 AATGCAATCGCATTCTCCGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTGATTTATCCA 14426 Query 165048 CTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTC 165107 ||||||| ||||||| || || || ||||| || ||||| || ||| ||||| Sbjct 14425 TAAGGTCAGTTTGGTTGGTTCTTTGCACCCAATTTTGGTGTAGCAGCTATATTTCGATTC 14366 Query 165108 CTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGTGTT 165167 | | || | ||||| || | || ||||| | ||| | || || |||||||| ||| Sbjct 14365 ATCCTATTTTTCCAAGGGTTTTATAATTGGACATTGAACTCATTTCACATGATGGGAGTT 14306 Query 165168 GC--AGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCACAGTTGAAAATA 165225 || |||||| |||| | || |||||| ||||||||||| || | ||||||| Sbjct 14305 GCCGAGGTAT--TGGGTGCTGCTATGCTATGTGCTATTCATGACACTACCATAGAAAATA 14248 Query 165226 CATTATACGAGGATGGAGAGCAGGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAG 165285 | |||| || |||| || | |||||| || | ||| | | || || | Sbjct 14247 CCTTATTTGAAGATGATGATGGTGTAAATACATTCCCTACTTTTAACCCAACTCAAACTG 14188 Query 165286 AAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGG 165337 || | |||||||| ||||| || || ||| |||| ||||| || ||||| || Sbjct 14187 AATAAACTTATTCAATGGTTACCGCTAACTGCTTTTGGTCCCAAATCTTTGG 14136 >seq168 Length=274740 Score = 105 bits (116), Expect = 8e-18 Identities = 144/200 (72%), Gaps = 1/200 (1%) Strand=Plus/Plus Query 163680 TGTCGTCGGAATCTGGTTTACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGG 163739 ||| || || || ||||||||| | | || | |||| |||||| || ||| | || || Sbjct 245234 TGTAGTAGGTATTTGGTTTACT-CTTTAGGTATTAGCATCATGGCTTTTAACTTAAATGG 245292 Query 163740 TTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGA 163799 ||| || ||||| || | | ||||| || | |||||||| | || || | || | Sbjct 245293 TTTTAATTTCAATCAATTTGTAGTTGATAGTTAAGGTCGTGTAATTAATACCTAGGTTAA 245352 Query 163800 CGTGCTTAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTT 163859 | ||||||| ||| ||| |||||||||||||||||||| ||||| || || ||||| Sbjct 245353 TATCATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTT 245412 Query 163860 CCCACTCGATCTTGCTGCTG 163879 | | || || || || |||| Sbjct 245413 CTCTCTAGACCTAGCGGCTG 245432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563012511840600