Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq143 165 2e-35 >seq143 Length=298601 Score = 165 bits (182), Expect = 2e-35 Identities = 387/577 (67%), Gaps = 13/577 (2%) Strand=Plus/Minus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 || || | ||| || || || | ||||||||| ||||| || ||| | | |||||||| Sbjct 58219 TACAGAAGGCACGCGAAATCGCAGTGCAAGCCCTCGTCTCGCGAGATCAACTCGTTGGAG 58160 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 ||| ||| || ||||| | ||| | || || |||||||| || || ||| || Sbjct 58159 AAGGTGAGTCCCGGCATCAACCCGCGCTTCTTTAGCCAGAAGATGGCGCAGAAGCTTCCG 58100 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC 48301 ||||||||||| || || || ||||| ||| |||| | ||| |||| || || Sbjct 58099 GAGAAGAAGATCCCTTCGACGCAGGCGAAGGCGATGAGGCGCTCGGCGAAGGACTCGGAG 58040 Query 48302 TTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCT 48361 ||| ||||||| || ||||| | ||||||||| || ||| || | || || Sbjct 58039 CCGTC---GATCCAGCGGAGGGCCCACTGGGCCTTCTTCGCGACGCAAGGGACAGTGTCG 57983 Query 48362 ATGGCCCGGAAGA---GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGC 48418 ||||| ||||||| | |||| ||| | | ||| | ||||| ||| || Sbjct 57982 ATGGCGCGGAAGAGGCGGCTCTT---CTCGGCGGAATCCTTGATGTAGGTCTCGAGGAGG 57926 Query 48419 TTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTG 48478 |||||| || ||||| | ||||| || ||||||||||| ||||||||||| | Sbjct 57925 AGGCTGTACATTTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCACGC 57866 Query 48479 GCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCC 48537 ||||| ||||| || || | ||| | | || || |||||||| ||| || || Sbjct 57865 GCCTCCGCGACCTGGACCTCCTTCATGAA-CCCACCGGCGAGATTCTCTAGGACGATGCC 57807 Query 48538 ATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG 48597 || || || || |||||||| ||||| || | | ||| || ||||| | ||||||| Sbjct 57806 GTCGGAGGCGGCGAAGAAGGCGAGGACGTGGGTGATGAAGTGCTTCTCGTCGGGGGTGAG 57747 Query 48598 AGCATTCCAGC-CCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACG 48656 || ||| | | | | ||| | | ||||| || || || | ||||| || || | Sbjct 57746 GGC-TTCGAACTGGCGGATGTCCTGGGAGAGGTCGACCTCCTCGGCGGTCCAAAACGAGG 57688 Query 48657 CGAGTGCTTTTTTGTACATGCCCCATATGTCCGGATA 48693 | || || |||||||| |||| || ||||| || Sbjct 57687 CCTCGGCCTTCTTGTACATCTCCCAGATCTCCGGGTA 57651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931206821740800